Gene detail information of Glyur001978s00029871.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32490.10RNA helicase family protein
NRXP_006582003.10PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Glycine max]
COGYP_315766.11.00E-121ATP-dependent helicase HrpA [Thiobacillus denitrificans ATCC 25259]
Swissprottr|Q38953|DHX8_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|K7KW48|K7KW48_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G21821.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019782514741281-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12813DHX16 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

biological_process

GO:0006397  mRNA processing


molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001978s00029871.1PF00271.26Helicase_C6787659.60E-13
Glyur001978s00029871.1PF04408.18HA28269189.80E-26
Glyur001978s00029871.1PF07717.11OB_NTP_bind95210523.60E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.003
SRR1783600control14.236
SRR1783602moderate drought stress15.830
SRR1811619moderate drought stress15.986

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.714
DRR006520Root Summer glycyrrhizin high producing strain15.387
DRR006521Root Winter glycyrrhizin high producing strain24.370
DRR006522Root Winter glycyrrhizin high producing strain23.735
DRR006523Root Summer glycyrrhizin low producing strain15.541
DRR006524Root Summer glycyrrhizin low producing strain15.299
DRR006525Leaf Summer glycyrrhizin high producing strain11.205
DRR006526Leaf Summer glycyrrhizin high producing strain11.128

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.873
SRR2868004Drought Stress(Tissue:root)26.521
SRR2967015Control (Tissue:root)27.484

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.158
SRR9715740Leave17.340
SRR9715741Leave21.772
SRR9715739Root1.266
SRR9715742Root9.537
SRR9715743Root8.736

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.740
SRR8749028MeJA induced 9h26.732
SRR8749029MeJA induced 9h15.329
SRR8749030Uninduced8.723
SRR8749031Uninduced7.707
SRR8749032Uninduced7.133

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.626
SRR8400027Control-Root22.919

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved