Gene detail information of Glyur001982s00031838.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16170.12.00E-173AMP-dependent synthetase and ligase family protein
NRXP_004506833.10PREDICTED: malonate--CoA ligase-like isoform X2 [Cicer arietinum]
COGYP_004655716.11.00E-88long-chain-fatty-acid--CoA ligase [Runella slithyformis DSM 19594]
Swissprottr|Q8H151|AAE13_ARATH0Malonate--CoA ligase
trEMBLtr|I1KGM8|I1KGM8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G02180.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01982388212994+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K18660ACSF3 EC:6.2.1.- Valine, leucine and isoleucine degradation map00280


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001982s00031838.1PF00501.23AMP-binding805022.30E-63
Glyur001982s00031838.1PF13193.1AMP-binding_C5115958.90E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.350
SRR1783600control12.640
SRR1783602moderate drought stress12.832
SRR1811619moderate drought stress12.849

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.775
DRR006520Root Summer glycyrrhizin high producing strain9.464
DRR006521Root Winter glycyrrhizin high producing strain57.908
DRR006522Root Winter glycyrrhizin high producing strain56.769
DRR006523Root Summer glycyrrhizin low producing strain11.862
DRR006524Root Summer glycyrrhizin low producing strain11.868
DRR006525Leaf Summer glycyrrhizin high producing strain9.082
DRR006526Leaf Summer glycyrrhizin high producing strain8.733

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.644
SRR2868004Drought Stress(Tissue:root)57.698
SRR2967015Control (Tissue:root)72.282

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.361
SRR9715740Leave12.367
SRR9715741Leave24.508
SRR9715739Root9.377
SRR9715742Root25.764
SRR9715743Root22.714

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.112
SRR8749028MeJA induced 9h66.806
SRR8749029MeJA induced 9h40.991
SRR8749030Uninduced167.556
SRR8749031Uninduced225.879
SRR8749032Uninduced112.635

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.634
SRR8400027Control-Root39.495

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved