Gene detail information of Glyur001990s00033281.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G56190.10Phosphoglycerate kinase family protein
NRXP_004488763.10PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cicer arietinum]
COGYP_007130152.10phosphoglycerate kinase [Gloeocapsa sp. PCC 7428]
Swissprottr|Q42961|PGKH_TOBAC0Phosphoglycerate kinase, chloroplastic (Precursor)
trEMBLtr|G7IT85|G7IT85_MEDTR0Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0199036527314-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00927PGK, pgk EC:2.7.2.3 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0006096  glycolytic process


molecular_function

GO:0004618  phosphoglycerate kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001990s00033281.1PF00162.14PGK894666.60E-160


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control73.961
SRR1783600control74.496
SRR1783602moderate drought stress80.393
SRR1811619moderate drought stress79.636

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain68.005
DRR006520Root Summer glycyrrhizin high producing strain67.953
DRR006521Root Winter glycyrrhizin high producing strain11.032
DRR006522Root Winter glycyrrhizin high producing strain11.188
DRR006523Root Summer glycyrrhizin low producing strain99.797
DRR006524Root Summer glycyrrhizin low producing strain100.056
DRR006525Leaf Summer glycyrrhizin high producing strain1184.004
DRR006526Leaf Summer glycyrrhizin high producing strain1175.162

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)96.671
SRR2868004Drought Stress(Tissue:root)72.764
SRR2967015Control (Tissue:root)54.364

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1026.330
SRR9715740Leave1125.358
SRR9715741Leave722.873
SRR9715739Root95.925
SRR9715742Root67.830
SRR9715743Root74.127

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.423
SRR8749028MeJA induced 9h36.454
SRR8749029MeJA induced 9h28.040
SRR8749030Uninduced18.286
SRR8749031Uninduced4.498
SRR8749032Uninduced17.660

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root99.974
SRR8400027Control-Root106.255

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved