Gene detail information of Glyur001994s00033875.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G36880.20acetyl-CoA synthetase
NRXP_003548482.10PREDICTED: acetate--CoA ligase ACS, chloroplastic/glyoxysomal-like [Glycine max]
COGYP_003809134.10acetate/CoA ligase [Desulfarculus baarsii DSM 2075]
Swissprottr|B9DGD6|ACS_ARATH0Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal (Precursor)
trEMBLtr|I1ML63|I1ML63_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G04910.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019942313432313-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01895ACSS, acs EC:6.2.1.1 Carbon metabolism map01200
Glycolysis / Gluconeogenesismap00010
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Carbon fixation pathways in prokaryotesmap00720
Methane metabolismmap00680


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0019427  acetyl-CoA biosynthetic process from acetate


molecular_function

GO:0003824  catalytic activity

GO:0003987  acetate-CoA ligase activity

GO:0016208  AMP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001994s00033875.1PF00501.23AMP-binding2126513.50E-93
Glyur001994s00033875.1PF13193.1AMP-binding_C6477062.10E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.975
SRR1783600control23.494
SRR1783602moderate drought stress16.315
SRR1811619moderate drought stress16.250

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.525
DRR006520Root Summer glycyrrhizin high producing strain23.314
DRR006521Root Winter glycyrrhizin high producing strain19.548
DRR006522Root Winter glycyrrhizin high producing strain18.726
DRR006523Root Summer glycyrrhizin low producing strain18.036
DRR006524Root Summer glycyrrhizin low producing strain17.715
DRR006525Leaf Summer glycyrrhizin high producing strain20.847
DRR006526Leaf Summer glycyrrhizin high producing strain20.575

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.744
SRR2868004Drought Stress(Tissue:root)56.746
SRR2967015Control (Tissue:root)53.012

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.620
SRR9715740Leave39.453
SRR9715741Leave35.429
SRR9715739Root9.425
SRR9715742Root24.546
SRR9715743Root23.695

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h41.363
SRR8749028MeJA induced 9h50.066
SRR8749029MeJA induced 9h57.943
SRR8749030Uninduced86.316
SRR8749031Uninduced132.554
SRR8749032Uninduced127.876

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.201
SRR8400027Control-Root40.404

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved