Gene detail

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Gene detail information of Glyur002004s00032222.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33620.1	2.00E-116	Cysteine proteinases superfamily protein
NR	XP_004485610.1	0	PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cicer arietinum]
Swissprot	tr\|Q0WKV8\|ULP2A_ARATH	1.00E-139	Probable ubiquitin-like-specific protease 2A
trEMBL	tr\|G7IS57\|G7IS57_MEDTR	0	Ulp1 protease family, carboxy-terminal domain protein {ECO:0000313\|EMBL:AES63518.2}

Sequence

Transcript Sequence

>Glyur002004s00032222.1
CTTTACGGCAACACCCTGACATTTCTGTAATTTTGGTAAGCGAGTTACTCCCTCTCCTCGACTCGTCCCCACTCACTCACTCACTCACTCACTCATTCCATGACTCGGCGCAACCGATCCTCGTCTTCTTCCTCCTCCTCAACCAAGAAATTCGACGTGTTCGAGTTCAACGAAGACGACGAGAACATAGAAGTCTATCAGAGGATGATTTGCAACAAGTTCTCAAACCCTAGCAAGCCTCGCTACTCCCGCATTTCCAAGTACGAGTTCCTCCAAGCCTTTGCGCAGGGTTCCAATCCTCTATCCAAGCCCGTTACCAGTGATGATCCTATTGACCTTGATGCCGAACAAGAATCAGAATCAGAAGCAGCCAAGTGCTCACCGGAGCAAGTTTCCAACAAACCGTTAGAGGTTTGCGATGATGACGATGGTGGTGGCATTGATGATCAAGGCAAACATGCTAATGCATGTTCAATGGACATGCCACTACAACACTATACTACCGAGTTTGTGGAAAGCGACTTTGACTTTAAAAGTCAGTCACTTGATACGCNTTCTGATGATGACGACACTAGTCAAATAAGTTCGTCTTCAAATTCTAGTTTAAATCCTTCACAAGTTGAAGTTAACTTTGAAGACCCGCTAGTGGAGNATGGTTCTGCTGCATTTAAAATTAATGACAAAGAAAAGGTCGTTGATGTCTTCCCTGATTTTGTTCGATATGAGGATCTATATTCCACTAGATCTCGGTTAATATTCTCGCGCAGCTCCCTGAAACTTGAAGGCTCAACAATCAATGGAACTGGGGGAACTTTTAAANTTGAGTGGGAAACTGAGGATATTATAAAAATTGAATCATGCTGGTTTGGAAAGATTGAAACAGCCTTGATCAACCTTCTCCTCAAATCAAAAGATTCTAGAGAAGCTGGCATTACAAATGAAAATCCAGGCTTTAAGCTGTTGAAATTTGCAGTTTATGATTCACATTGGTCCAAGGCAGAAGAGGCTATCAAATTATTGGATATGAGATACACAGATACATGGAGTACTATTTTTGACATTGATACAGATAACCGGAATATTTCTGCATTGGNGAGGGACAGTTTTTTCTCTCAGAGGCATTATTTTCCCATTTTTGATGAGGCTTTTGAAGAGGTTATTTTTCCAAAGGGGGAGCCTGATGCTGTTTCCATTAGTAAGAGAGATGTTGAGCTTTTACAACCAGAGACATTCATCAATGATACCATCATTGACTTTTATATCAAGCATTTGAAAAATAAACTCCCAATTGATGAACAGGAGAGGTTTCACTTTTTCAATAGCTTCTTCTTTCGGAAGCTAGCTGATTTAGACAAAGATCCATCAAGTGCTTGTGATGGTAGAGCAGCATTTCAACGTGTACGTAAATGGACAAGAAAAGTGAACCTTTTTGAAAAGGATTATATCTTGATTCCCATAAACTACAGTCTTCACTGGAGTTTGATTGTCATTTGTCATCCTGATGAAGAAATTAAAGAATCTTCCAAAGTACCTTGCGTGTTGCACATGGATTCCCTAAGAGGAAGTCATAAAGGTCTCAAGAATGTTTTCCAAAGTTACCTGTGTGAAGAATGGAAAGANAGGCACGCCAATGTGGTGGATGATTTTTCTTCTAAATTTTTACAGTTGCGATTCATCTCGCTAGAGCTGCCTCAGCAGGAAAACTTCTATGATTGTGGTCTNTTTTTGCTCCATTATGTGGAATGTTTTCTGAAGGAAGCTCCTATNAACTTTAACCCTTTCAAGATATCTGAGTTTTCCAACTTTTTGAGTCACATTTGCATTTCTTCNTTTCATTCTCAGTTGAATAGTAACTGGTTCCCTCCGCCTGAGGCTTCTCTGAAACGATCTCATATACAGAACTTAATTTATGATATATTTGAAAACAATTCTTTGCAAGAACCTCCTGCTGATTGCCGTGACAAAGGTCCTCTCTCTGAAGTACCTGNCATTATCAAGCACAAAGTGGAAGCNGATTCCCCTGGGGATTGCTGTTATCCTGCTATGTGGCATGGGAATCCTTTCAATTCCTCTACTGAACTGANAGATGATATTCAGTTCCCAACTGTTATCTCGCCCATAAGAGTTGCATCTTGTTTGAGAGAACCTGGAATTGTTTTCAAGGACTTGCAAGCGGCAGTTGTAACTTCACATTCTGATTGTCTGCAGATGTCAGCATGCCATCATAGAGGCTTCATGTCACCAATAGAGGAAACTGAAGAGTTTCGTGAGGAAACTGCTATATCAATAGAGAGAGAAAATTCTCACGTTGGCATATTGGCATCTGATTTTCCATCCNCATCATATATAAGCAAAGATCATAGAGCATCAGAAACAACACAGCTGGAATTCTCTATAAATTTTGTTGAAGCTGTTGCGGGAAATTCATATTCAAGAACACCTACTATTGTATCTCGGAACACATTGGATACAGGTGCTCTTGAAGACCAGCCTCTCGAGAAAATTGAAGAGTCTAACATTCCAGACAAGACGGCACTTGAGGATCTTGAAGACTCTGTTGTTCAAGATTCTCAAGAGTCTAATGATGGGCATGNTATTGATGGGATTGTGAAATCTCGTTCCTCATTCCAAGAAAATATAAATTCAGTGACCCATCAAATCTTTGATTTGACTNAGAACATAAATCTTGAAGATGATACTTCAGTTAGCAAGAAAGAGCCACTAGCATCCGAATCTAATGAACCAGATGCCAAGAGGCCGAAGCTTATGAATGCAGCAGGTGGTCCAAGTCGACGATTCACAAGAAGCATGTTAAAAGAAGCATGTTTAATGTCTTNTGAATAGTGTTAGTAGCAGCATAAAAGGTTATAGGCAAATTAAATGTTAATATTTGGAAGCACTAACCCCGAACCAAAGACACAGGTAGAAGAGAAATGAGCGATATCAAAGAGCNTTTTTGGCACCGAACACTTGCCTCACGTCTGCAGGATGACGTATATAAACGTTGAAACCTTTNTGTTTTAATTTTGGTGGGACTGGTAAAATTTAGACACTCCCACACAAACTTCATAGTGTAAATATATCAAATGTTCTATCTAAGGATCATGGCAACGTACAGCATGCACCAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02004	42005	50718	+

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002004s00032222.1	PF02902.14	Peptidase_C48	378	561	4.30E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.058
SRR1783600	control	11.084
SRR1783602	moderate drought stress	9.968
SRR1811619	moderate drought stress	9.965

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.203
DRR006520	Root Summer glycyrrhizin high producing strain	10.818
DRR006521	Root Winter glycyrrhizin high producing strain	6.171
DRR006522	Root Winter glycyrrhizin high producing strain	5.894
DRR006523	Root Summer glycyrrhizin low producing strain	11.192
DRR006524	Root Summer glycyrrhizin low producing strain	11.353
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.947
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.665

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	11.115
SRR2868004	Drought Stress(Tissue:root)	14.877
SRR2967015	Control (Tissue:root)	14.523

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.956
SRR9715740	Leave	5.132
SRR9715741	Leave	6.428
SRR9715739	Root	1.575
SRR9715742	Root	5.390
SRR9715743	Root	5.305

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.732
SRR8749028	MeJA induced 9h	12.381
SRR8749029	MeJA induced 9h	7.571
SRR8749030	Uninduced	3.581
SRR8749031	Uninduced	2.046
SRR8749032	Uninduced	2.278

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	14.941
SRR8400027	Control-Root	15.711