Gene detail information of Glyur002022s00030448.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26510.20uridine kinase-like 4
NRKHN23819.10Uridine kinase-like protein 4 [Glycine soja]
COGNP_242141.14.00E-57uridine kinase [Bacillus halodurans C-125]
Swissprottr|O65583|UKL4_ARATH0Putative uracil phosphoribosyltransferase
trEMBLtr|K7M4A7|K7M4A7_SOYBN0Uridine kinase {ECO:0000256|RuleBase:RU003825}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0202219067887+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00876udk, UCK EC:2.7.1.48 Pyrimidine metabolism map00240
Drug metabolism - other enzymesmap00983


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0044206  UMP salvage


molecular_function

GO:0004849  uridine kinase activity

GO:0005524  ATP binding

GO:0016301  kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002022s00030448.1PF00485.13PRK492351.60E-42
Glyur002022s00030448.1PF14681.1UPRTase2654661.30E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.041
SRR1783600control7.014
SRR1783602moderate drought stress3.136
SRR1811619moderate drought stress3.122

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.696
DRR006520Root Summer glycyrrhizin high producing strain8.461
DRR006521Root Winter glycyrrhizin high producing strain1.509
DRR006522Root Winter glycyrrhizin high producing strain1.406
DRR006523Root Summer glycyrrhizin low producing strain3.329
DRR006524Root Summer glycyrrhizin low producing strain3.408
DRR006525Leaf Summer glycyrrhizin high producing strain0.962
DRR006526Leaf Summer glycyrrhizin high producing strain0.964

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.087
SRR2868004Drought Stress(Tissue:root)6.457
SRR2967015Control (Tissue:root)6.392

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.878
SRR9715740Leave0.515
SRR9715741Leave0.791
SRR9715739Root1.425
SRR9715742Root2.720
SRR9715743Root2.654

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.449
SRR8749028MeJA induced 9h2.292
SRR8749029MeJA induced 9h2.159
SRR8749030Uninduced0.553
SRR8749031Uninduced0.042
SRR8749032Uninduced0.156

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.586
SRR8400027Control-Root14.533

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved