Gene detail

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Gene detail information of Glyur002022s00030457.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55740.1	0	seed imbibition 1
NR	XP_003617907.1	0	Alkaline alpha galactosidase I [Medicago truncatula]
COG	YP_004464004.1	4.00E-67	raffinose synthase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q84VX0\|RFS1_ARATH	0	Probable galactinol--sucrose galactosyltransferase 1
trEMBL	tr\|G7K4U6\|G7K4U6_MEDTR	0	Galactinol-raffinose galactosyltransferase {ECO:0000313\|EMBL:AET00866.1}

Sequence

Transcript Sequence

>Glyur002022s00030457.1
CGTCCTCTGATATCTTCTCTCATTTGGATTTGGAACAGAGACCTCACTGCTAAGGGGGAAGCCCGTGCTGTTACTGTTGCTGTGATTCCCTTTGCCACTGTTGAAGCCTCTTTTGAGGATTGTTTTTATTTTTTGCTTCCAACAAGAACAAGAACAAGAAGAAGAAGGAAATTAAGAAGGATGACTGTGGGGGCAGGGATATCTGTTGCTGATGGCAACTTGATGGTGTTGGGGAACAAGGTTCTGAGTCAGGTCCATGACAACGTTCTTGTTACCCCTCCATCTGGGGGTGCCCTTCTCAATGGTGCATTCCTTGGTGTTGCTTCTGATCAAAAGGGTAGCCGCAGAGTCTTCCCCATCGGCAAACTTGAGGGGTTGAGATTTATGTGTCTTTTCCGGTTTAAAATGTGGTGGATGACACAGAGAATGGGCACTTGTGGACAAGAAGTACCCATTGAGACGCAGTTCTTGCTTATTGAAGCGCATGAGGGCTCTGATATTGATGGAGGGATCAACAATGGAATTGGAGGAGAAAACCAAGGTGGTGCTGGTGGTGCTACCTATGTGGTTCTGTTACCCCTTTTGGAAGGAGATTTCAGAGCAGTTCTTCAGGGGAACGATCAGAACGAAATTGAGATCTGTGTGGAAAGTGGTTGTCCTGCTGTGGAGGAATTCNATGGGACTCATCTGGTGTTTATTGGAGCTGGATCAGACCCTTATGAAGTCATCACAAATGCTGTCAAGACTGTTGAGAAACACTTGAAGACNTTTTCTCATCGCGAGAGAAAGAAGATGCCAGATATGCTAAACTGGTTTGGGTGGTGTACATGGGATGCTTTCTATACCAGTGTCACTTCAGAGAATGTGAAGCAAGGATTAAACAGTTTTGAGGAAGGTGGAATTCCTGCTAAGTTTGTCATAATTGATGATGGATGGCAATCTGTTTGTATGGACCCAAATGGTATTGAATGGAAAGCTGATAATGCAGCCAACTTTGCAAATCGCTTAACTCATATCAAAGAGAATCNTAAGTTTCAGAAAGATGGGAAGGAAGGTCACCAGGTAGAGGACCCTGCCATGGGACTTCGTCATATTACCGATGAGATCAAACAAGAGCATGCCATAAAGTACGTGTATGTGTGGCATGCAATAACAGGATATTGGGGTGGTGTTAAACCTGGTGTTAGTGGCATGGAGCATTACGAGTCAAAGATGGCCTTCCCCGTCTCATCTCCTGGAGTCCAGTCGAATCAACCAGATGAAGCGTTAGATACCATCGCCGTGAATGGGCTTGGCCTTGTGAATCCTGAGAAAGTTTATCACTTTTATGATGAACTCCACTCATATCTTGCATCTGCTGGTATTGATGGTGTCAAAGTTGATGTTCAGAATATCCTTGAAACTCTTGGGGCAGGACATGGTGGGAGGGTGAAACTTGCAAAAAAGTACCACCAGGCCTTGGAGGCATCAATCTCTAGGAACTTCCCNGATAATGGAATCATTTGCTGCATGAGTCACAATACTGATGGATTGTACATTACAAAGCGTTCGGCTGTTATTCGGGCGTCAGATGATTTCTGGCCAAGAGACCCTGCATCACACACGATTCACATTGCATCAGTTGCTTACAATACTATTTTCCTNGGTGAATTTATGCAGCCAGATTGGGATATGTTTCATAGCCTACATCCAATGGCTGAATACCATGCTGCTGCAAGAGCAGTTGGAGGATGTCCTATTTATGTCAGTGACAAGCCTGGACACCATGACTTTAATCTCTTGAAGAAACTTGCACTTCCTGATGGTTCTATATTAAGGGCTAAACTTCCAGGAAGACCAACCAAGGATTGCTTATTTGCTGATCCTGCTAGAGATGGAAAGAGTCTTTTGAAGATATGGAACATGAATGACTTTTCTGGAGTTGTTGGGGTATTCAACTGCCAAGGAGCTGGGTGGTGCAAAGTTGGAAAGAAGAACCTTATCCACGATGAGAATCCGGGCACAGTTACTGGCATCATTAGGGCCAAAGATGTTGACTATTTATCCAGGGTTGCAGATGATAAATGGACAGGAGACTCCATTATATTTTCCCATGTTGGTGGTGAAGTAGTTTACCTTCCAAAGGATGTATCTATCCCAATTACCATGAAATCCCGGGAATATGAAGTTTTTACGGTAGTTCCGGTGAAGGAGTTAACAAATGGTGTCAAATTTGCTCCTATTGGTTTAATCAAGATGTTCAATTCAGGAGGGGCTGTCAAAGAGCTCNGTTCTGGATCCAATGGAAGTGGTACAAATGTTACCATGAGAGTCCGTGGGTGTGGCCGCTTTGGTGCTTATTCATCGGCTCGGCCTAAGTTGGTNACAGTTGATTCAGAAGAGGTGGAATGCAGGTATGAGGAGGAATCTGGATTGGTGACTATTGATTTGAGAGTACCAGAGAAAGAGTTATACCAATGGAGCATTTGTATTGAATTTTGAATCAGAAGAGTTTGCCTTTGAATGAGGTGGTTCTAANCCTCTAGTGCATCTAAAGTTGGTGGCAATTTGATGAGTCTATGTAGACCTTTTAGNAGGAAATATTTGTAGGTCCTAATTCTTGTAATGTATAGCCAGANACAAGTGAATGGATTTCACAAAGCTTTCCATCAACTTCTTGTAACANACATGAGATGAGCAGAATGCAAAAGCGAAAAATTCAAAAGCAGCCAATAATATCTTTTTATGCTTTATTTTCTCAATTTGTAATTGTTGAATGTGGAAGTTACACAAGAGATATGCAAAAGTTTCATGACCTACCAAGATATGACAAAAGAGTTACTTCTCCTTCTTGAACAAGAATTCTTTAGAAAAGACAATTCCAAAAGATATGGGCGAAAAGAAACAAGAAATATGAAAATTAAGGCTGTTATGAGTTATGACAGACAATGGACATGCTTGCAAGAGTGCTATAAGATATCTGCTATCAGGCTATGTGGCTTCAGTGGCTAGCTTTTATGATTCTGATTTTGAATGTCTGATCTGGCACATTGCTTCTGAATGCACCAAAAAATCACTTTGGTGGAATTGTAAAGAAGCTGGATACTGTAAATTCATATTGGTATGAACCCCTTTATTCTAGTTCTCTCTTTTTTTTTTTGGTCAAATATTCTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02022	39665	44749	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH36

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06617	E2.4.1.82	EC:2.4.1.82	Galactose metabolism	map00052

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002022s00030457.1	PF05691.7	Raffinose_syn	67	809	1.90E-302

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.704
SRR1783600	control	12.618
SRR1783602	moderate drought stress	25.731
SRR1811619	moderate drought stress	25.223

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.949
DRR006520	Root Summer glycyrrhizin high producing strain	54.258
DRR006521	Root Winter glycyrrhizin high producing strain	9.417
DRR006522	Root Winter glycyrrhizin high producing strain	9.259
DRR006523	Root Summer glycyrrhizin low producing strain	133.838
DRR006524	Root Summer glycyrrhizin low producing strain	133.411
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.792
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.228

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	41.602
SRR2868004	Drought Stress(Tissue:root)	134.036
SRR2967015	Control (Tissue:root)	95.676

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	25.089
SRR9715740	Leave	27.391
SRR9715741	Leave	24.709
SRR9715739	Root	9.362
SRR9715742	Root	34.458
SRR9715743	Root	30.961

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	183.057
SRR8749028	MeJA induced 9h	214.587
SRR8749029	MeJA induced 9h	142.455
SRR8749030	Uninduced	181.056
SRR8749031	Uninduced	740.186
SRR8749032	Uninduced	644.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	45.335
SRR8400027	Control-Root	53.125