Gene detail information of Glyur002022s00030457.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55740.10seed imbibition 1
NRXP_003617907.10Alkaline alpha galactosidase I [Medicago truncatula]
COGYP_004464004.14.00E-67raffinose synthase [Mahella australiensis 50-1 BON]
Swissprottr|Q84VX0|RFS1_ARATH0Probable galactinol--sucrose galactosyltransferase 1
trEMBLtr|G7K4U6|G7K4U6_MEDTR0Galactinol-raffinose galactosyltransferase {ECO:0000313|EMBL:AET00866.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold020223966544749+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH36


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06617E2.4.1.82 EC:2.4.1.82 Galactose metabolism map00052


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002022s00030457.2PF05691.7Raffinose_syn672661.10E-56


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.704
SRR1783600control12.618
SRR1783602moderate drought stress25.731
SRR1811619moderate drought stress25.223

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.949
DRR006520Root Summer glycyrrhizin high producing strain54.258
DRR006521Root Winter glycyrrhizin high producing strain9.417
DRR006522Root Winter glycyrrhizin high producing strain9.259
DRR006523Root Summer glycyrrhizin low producing strain133.838
DRR006524Root Summer glycyrrhizin low producing strain133.411
DRR006525Leaf Summer glycyrrhizin high producing strain16.792
DRR006526Leaf Summer glycyrrhizin high producing strain17.228

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.602
SRR2868004Drought Stress(Tissue:root)134.036
SRR2967015Control (Tissue:root)95.676

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.089
SRR9715740Leave27.391
SRR9715741Leave24.709
SRR9715739Root9.362
SRR9715742Root34.458
SRR9715743Root30.961

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h183.057
SRR8749028MeJA induced 9h214.587
SRR8749029MeJA induced 9h142.455
SRR8749030Uninduced181.056
SRR8749031Uninduced740.186
SRR8749032Uninduced644.337

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.335
SRR8400027Control-Root53.125

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved