Gene detail information of Glyur002023s00037752.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02760.1 | 3.00E-18 | ubiquiting-conjugating enzyme 2 |
| NR | XP_002511538.1 | 3.59E-22 | ubiquitin-conjugating enzyme rad6, putative [Ricinus communis] |
| Swissprot | tr|P35130|UBC2_MEDSA | 5.00E-23 | Ubiquitin-conjugating enzyme E2 2 |
| trEMBL | tr|B9R963|B9R963_RICCO | 1.00E-22 | Ubiquitin-conjugating enzyme rad6, putative {ECO:0000313|EMBL:EEF52140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02023 | 32725 | 34199 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10573 | UBE2A, UBC2, RAD6A | EC:2.3.2.23 | Ubiquitin mediated proteolysis | map04120 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002023s00037752.1 | PF00179.21 | UQ_con | 68 | 104 | 6.90E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.026 |
| SRR1783600 | control | 1.289 |
| SRR1783602 | moderate drought stress | 1.626 |
| SRR1811619 | moderate drought stress | 1.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.507 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.052 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.443 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.870 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.905 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.851 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.139 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.742 |
| SRR2967015 | Control (Tissue:root) | 8.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.403 |
| SRR8749028 | MeJA induced 9h | 26.045 |
| SRR8749029 | MeJA induced 9h | 39.450 |
| SRR8749030 | Uninduced | 13.988 |
| SRR8749031 | Uninduced | 9.917 |
| SRR8749032 | Uninduced | 18.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.019 |