Gene detail information of Glyur002024s00033082.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G42660.10transducin family protein / WD-40 repeat family protein
NRAES65941.20transducin family protein/WD-40 repeat protein [Medicago truncatula]
COGYP_003300732.13.00E-34metallophosphoesterase [Thermomonospora curvata DSM 43183]
Swissprottr|Q8W1K8|MUT11_CHLRE1.00E-19Protein Mut11
trEMBLtr|G7IT11|G7IT11_MEDTR0Transducin family protein/WD-40 repeat protein {ECO:0000313|EMBL:AES65941.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold020241010716189-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002024s00033082.1PF00400.27WD4058921.70E-07
Glyur002024s00033082.1PF00400.27WD401071320.091
Glyur002024s00033082.1PF00400.27WD401421761.60E-06
Glyur002024s00033082.1PF00400.27WD402382686.10E-07
Glyur002024s00033082.1PF12341.3DUF36395315578.50E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.425
SRR1783600control1.535
SRR1783602moderate drought stress0.682
SRR1811619moderate drought stress0.737

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.769
DRR006520Root Summer glycyrrhizin high producing strain1.696
DRR006521Root Winter glycyrrhizin high producing strain1.011
DRR006522Root Winter glycyrrhizin high producing strain1.006
DRR006523Root Summer glycyrrhizin low producing strain1.039
DRR006524Root Summer glycyrrhizin low producing strain0.957
DRR006525Leaf Summer glycyrrhizin high producing strain4.662
DRR006526Leaf Summer glycyrrhizin high producing strain4.522

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.944
SRR2868004Drought Stress(Tissue:root)3.230
SRR2967015Control (Tissue:root)4.086

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.486
SRR9715740Leave0.619
SRR9715741Leave1.239
SRR9715739Root0.297
SRR9715742Root0.837
SRR9715743Root0.924

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.250
SRR8749028MeJA induced 9h6.098
SRR8749029MeJA induced 9h1.768
SRR8749030Uninduced0.181
SRR8749031Uninduced0.064
SRR8749032Uninduced0.114

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.200
SRR8400027Control-Root3.530