Gene detail information of Glyur002024s00033082.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G42660.1 | 0 | transducin family protein / WD-40 repeat family protein |
NR | AES65941.2 | 0 | transducin family protein/WD-40 repeat protein [Medicago truncatula] |
COG | YP_003300732.1 | 3.00E-34 | metallophosphoesterase [Thermomonospora curvata DSM 43183] |
Swissprot | tr|Q8W1K8|MUT11_CHLRE | 1.00E-19 | Protein Mut11 |
trEMBL | tr|G7IT11|G7IT11_MEDTR | 0 | Transducin family protein/WD-40 repeat protein {ECO:0000313|EMBL:AES65941.2} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold02024 | 10107 | 16189 | - |
Gene family
Gene family | subfamily |
---|---|
Ubiquitin Family | DWD |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur002024s00033082.1 | PF00400.27 | WD40 | 58 | 92 | 1.70E-07 |
Glyur002024s00033082.1 | PF00400.27 | WD40 | 107 | 132 | 0.091 |
Glyur002024s00033082.1 | PF00400.27 | WD40 | 142 | 176 | 1.60E-06 |
Glyur002024s00033082.1 | PF00400.27 | WD40 | 238 | 268 | 6.10E-07 |
Glyur002024s00033082.1 | PF12341.3 | DUF3639 | 531 | 557 | 8.50E-10 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 1.425 |
SRR1783600 | control | 1.535 |
SRR1783602 | moderate drought stress | 0.682 |
SRR1811619 | moderate drought stress | 0.737 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 1.769 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 1.696 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 1.011 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 1.006 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 1.039 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.957 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.662 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.522 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 6.944 |
SRR2868004 | Drought Stress(Tissue:root) | 3.230 |
SRR2967015 | Control (Tissue:root) | 4.086 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 3.486 |
SRR9715740 | Leave | 0.619 |
SRR9715741 | Leave | 1.239 |
SRR9715739 | Root | 0.297 |
SRR9715742 | Root | 0.837 |
SRR9715743 | Root | 0.924 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 5.250 |
SRR8749028 | MeJA induced 9h | 6.098 |
SRR8749029 | MeJA induced 9h | 1.768 |
SRR8749030 | Uninduced | 0.181 |
SRR8749031 | Uninduced | 0.064 |
SRR8749032 | Uninduced | 0.114 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 5.200 |
SRR8400027 | Control-Root | 3.530 |