Gene detail information of Glyur002029s00034003.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60170.20RNA binding (RRM/RBD/RNP motifs) family protein
NRAFK44045.11.96E-06unknown [Medicago truncatula]
trEMBLtr|I3SUV3|I3SUV3_MEDTR7.00E-07Uncharacterized protein {ECO:0000313|EMBL:AFK44045.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02029650014982+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10643CNOT4, NOT4, MOT2 EC:2.3.2.27 RNA degradation map03018


Gene Ontology

molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002029s00034003.2PF14570.1zf-RING_49611.80E-20
Glyur002029s00034003.2PF13893.1RRM_51311942.30E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.855
SRR1783600control11.902
SRR1783602moderate drought stress11.155
SRR1811619moderate drought stress11.061

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.958
DRR006520Root Summer glycyrrhizin high producing strain17.638
DRR006521Root Winter glycyrrhizin high producing strain16.610
DRR006522Root Winter glycyrrhizin high producing strain16.044
DRR006523Root Summer glycyrrhizin low producing strain20.806
DRR006524Root Summer glycyrrhizin low producing strain20.607
DRR006525Leaf Summer glycyrrhizin high producing strain8.669
DRR006526Leaf Summer glycyrrhizin high producing strain8.516

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.107
SRR2868004Drought Stress(Tissue:root)31.222
SRR2967015Control (Tissue:root)28.036

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.748
SRR9715740Leave19.534
SRR9715741Leave26.091
SRR9715739Root5.042
SRR9715742Root26.685
SRR9715743Root21.686

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.702
SRR8749028MeJA induced 9h29.219
SRR8749029MeJA induced 9h18.703
SRR8749030Uninduced15.483
SRR8749031Uninduced20.703
SRR8749032Uninduced15.866

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.021
SRR8400027Control-Root25.225

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved