Gene detail information of Glyur002038s00029108.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50620.1 | 5.00E-81 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004491433.1 | 0 | PREDICTED: uncharacterized protein LOC101515729 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q5PNS0|Y3228_ARATH | 4.00E-37 | PHD finger protein At3g20280 |
| trEMBL | tr|I1JJE7|I1JJE7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G46490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02038 | 39233 | 46217 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002038s00029108.1 | PF00628.24 | PHD | 394 | 442 | 1.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.302 |
| SRR1783600 | control | 5.116 |
| SRR1783602 | moderate drought stress | 5.136 |
| SRR1811619 | moderate drought stress | 5.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.806 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.753 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.791 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.444 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.245 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.283 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.361 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.359 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.046 |
| SRR2967015 | Control (Tissue:root) | 12.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.505 |
| SRR9715740 | Leave | 10.494 |
| SRR9715741 | Leave | 9.745 |
| SRR9715739 | Root | 2.522 |
| SRR9715742 | Root | 8.174 |
| SRR9715743 | Root | 6.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.740 |
| SRR8749028 | MeJA induced 9h | 6.477 |
| SRR8749029 | MeJA induced 9h | 4.490 |
| SRR8749030 | Uninduced | 3.075 |
| SRR8749031 | Uninduced | 2.642 |
| SRR8749032 | Uninduced | 2.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.941 |
| SRR8400027 | Control-Root | 10.673 |