Gene detail

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Gene detail information of Glyur002038s00029108.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50620.1	5.00E-81	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_004491433.1	0	PREDICTED: uncharacterized protein LOC101515729 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q5PNS0\|Y3228_ARATH	4.00E-37	PHD finger protein At3g20280
trEMBL	tr\|I1JJE7\|I1JJE7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G46490.1}

Sequence

Transcript Sequence

>Glyur002038s00029108.2
GGGATCGTTTCGCTCTGGTCACCCACGCCACCCACCCATTACCCAAACCTCTCTCGTTTCGTTCTGTTTCATAAACTCAACTCACTAACCCATCCATCCCATCCAATCTAATTTCTATTTACCCCCAAACCCAAACCTCCCCTTCACTTCATCTCTCTCTCAAAATCTCAAATTCACTAACACTTACCCGCCAAAAAGGTTTCTCTCCGATGGAGGAGGTCCCGGAACCGACGCCGGATCCTCAACCGGCGGTGGAGAACGGTGGAGGAGTAGTGGAACCGGAGGAGCCGTGCAGCAAGAAGGCGAAGGTGGAGGAGGAGGTTGTGGCTTCGGAGGGGGAATTGAAGCGAGTGGCGGAGATTGTGTTGGTGTTATCAACGATGGCGACGATGCGAGGTGGAAGGAAACCAACCGAGGTTGAAGTTGAGCTCATGAGGGAGGCTAGGACCAAGCTCGCGAACCTCTGCCAGGGTCTCGCTCCAAAGGATATTGTTGCCGGTGAAGCTATTGGCACCGTCATCGAGGATCTCGGATTGAACTCCAAGATTAAGGAACAGAGGTTAGGGTTTCGAACTCCCAAGATGTCCATTGCCGAGAGGTATTCGCACGCTAAGTGGAAGATGGAGGAATCAAAGAAGTTCTCTGCACCTTCTACTACGTACACGTCTCAGCCCTTGCAAACAAGTGTCGGTGGAACAGTTGACAGTCACGTGACAACAAATGCTGTTCGAATTTTTGCGCCTGATAAGTCAAGCCACACAGCAATATCTTCTACAGGTACCGTGGTGCCTATTCCTCCCCATGTTTCTGCTGGTTCTTCTGCAGCGTTGCCATATCAATCGACCAGCAATGAAGGGAGACCGCCCGTGGTTTCTGGTGCAATGCATAGCAGTCACTTGGGGAGAAATTCATCTTCCTTAGTTTTGCCTAAAGTTGAACACTCACAGTTCAAAGTTAATGGAGGAGGATCAAATGGGCCTCCTTATGTGCTGCAAGTCCAAGCAAATTTGTCAGCAAACCAACCGTTGGTTAATGCTCCAACATGGTCAATACAGACTCAATCTGCATCATTAGCTAGAAGTGCATCAGAAAACAAGGTGCCTNCTCATAACTCTGCCAAGGTTGGAGGAACAGCTGATGTAGCTGTATCAAGGGTAGGGTCACAAATAACAACAGATCAAAGCTTTAGACCATTTATTACTCAAACAGCACCTGGAAATTTGTCCAGTATGCACCAGCCATTGCAGAGCGTGAACATGGTTCGACCTCCTTTGATTCCTAGTCATGCTGAAATTGCAAAGATTGTCCAGAGATTGTTACTACCAAAGTTTCCTGACCACCCCACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGATATGCGAGCTCACTGTCAATGAGGTTGATACTGCACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCTTGCAGCCATCAGTCTTAAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGTGGTGGGAAGCCTTTGCCTCCAAAATTTGGTCGTGTGATGAGATCCTCAAATACACCACCAAAGTTGCCCTCTAATACAGGTGGTATTCAACCATCTCCAGAGAAGAAAGCTGGGATATTAGATCCAAAGGTCATCCCGCAGATGTTAACAACAAATGGGAACTCTGTTCCAACTGTTTCCAGTGCCACAGTTGAGCCGTCATCTGAATCAAAGACCCCAGATATGAGGGATATACAAGATACCAACATTTCATCCAGCATTGAAACTATTGATGACAAGCCTGATCCAAACATATGTATGAAATCTGCAGCTCCTAATACTTCCACTGGCTTGCCAGGTGAAANTTCTGCTCAACAAATAAACTCTGAGGCTTCAACCTGTAAAGAAACTTCAGAATCTGAAACTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAATTTGCAATCATTGCAAGACTCTCAAGTTGAGATGACAGTGTCACAAGACAATGCTGAAGTATCATCTGATAAACACGTTAACAGTAGTTTTATGATTAGTGAACAAAAGGAATCTCATGAAAGAGAAAATTTAACTTATGATGTCAAGCGTGATGACCTAGATGTTGCACAAACAAATTTTGTTGGAGGTTCTGGAACTAATATTGAAGGTGGACACCACTCTGCTTTATCTTCAGATAGCTCACATGCTGTTGAATGGTCTGGGGATGTCTTACAACTTGTAGATGATAAAAAGTTTTACCAATCTTGTGTTGTTGATGGAATAACATATAGGCTGCAGGGCCATGCACTTTTCCCGTCCAGCCATGGCAAATTAACACCTTCTAAACTTCAGGCAAGCAAATCATCATGCTTTCCACTTTTCTGTTGTGATTTGATTGGTTTGCACTCTTGTTCTATGTGGGAAGATTGCAAGACTGGGATAAAGTGGGTTAAGGTCACAAAGTGCTTCTTTCCTGATGATTTACCAGGGAATATTGGTCATCCATGTATATCTGAAGTCAATGAGGTTTANGAATCTAATAGTGATAGAACTGAACTGGCTAGCACTATTCGAGGCCCATGTGAAGTCCTTCCATCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAATTAGGAATTGAGGCAAGTGCTAGAATACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTTATTTCAACCTGTTACCAGTTGATCTGTCTCGAATATACATGTTTTTGTGATTCCTACACATTGCAATTTTGTGGTATTTGGGTGGTTTCAAAACACTATTTTTTTAAATGGGTAATTGAGCATACATTAAGATTCATGAGAGACCCATTACAAGGCACATCGCTGCAGCATTTGCCTCCCCATGCAAGAATAGATAGCCGGGAAGCGTGAATCGCATTTGATGTAAAATATGTAAGCTGAAGCTGTGACTGCTTAGTTTAGTTTTAGCTCTATTAGTGCTGTTCCTTATAGATATTCATTCTGTATAATTTTTTTTTTTTTGTGTACGTAGGCTCTTTAGGCCCACTAATCACATTATTATCTTTGAAATTAGATTGCCAGTGTAGTCCACATAGTGTGCTGGAATTGTATAATATTTCGTTTGTACAAAAGTCCCTTCTAAAAGCATAACCATAGGAGGGAATTTCGTTGGTCATTGGACGCCAATTCAGCGATTAGCGATGATTTTTCTAGGTAGGGACAAATAATGTATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02038	39233	46217	+

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002038s00029108.2	PF00628.24	PHD	394	442	1.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.302
SRR1783600	control	5.116
SRR1783602	moderate drought stress	5.136
SRR1811619	moderate drought stress	5.085

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.806
DRR006520	Root Summer glycyrrhizin high producing strain	3.753
DRR006521	Root Winter glycyrrhizin high producing strain	11.791
DRR006522	Root Winter glycyrrhizin high producing strain	11.444
DRR006523	Root Summer glycyrrhizin low producing strain	4.245
DRR006524	Root Summer glycyrrhizin low producing strain	4.283
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.361
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	10.359
SRR2868004	Drought Stress(Tissue:root)	11.046
SRR2967015	Control (Tissue:root)	12.736

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	8.505
SRR9715740	Leave	10.494
SRR9715741	Leave	9.745
SRR9715739	Root	2.522
SRR9715742	Root	8.174
SRR9715743	Root	6.628

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.740
SRR8749028	MeJA induced 9h	6.477
SRR8749029	MeJA induced 9h	4.490
SRR8749030	Uninduced	3.075
SRR8749031	Uninduced	2.642
SRR8749032	Uninduced	2.825

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	12.941
SRR8400027	Control-Root	10.673