Gene detail

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Gene detail information of Glyur002041s00029895.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G62670.1	H(+)-ATPase 11
NR	KHN34527.1	Plasma membrane ATPase 1 [Glycine soja]
COG	YP_006722443.1	cation-translocating P-type ATPase [Geobacter metallireducens GS-15]
Swissprot	tr\|Q9LV11\|PMA11_ARATH	ATPase 11, plasma membrane-type
trEMBL	tr\|I1JMS2\|I1JMS2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G26620.1}

Sequence

Transcript Sequence

>Glyur002041s00029895.1
ATGTCACTTGAAGCTGTTATTAAGGAAGCTGTTGATCTGGAGAATGTTCCTCTTGAGGAGGTTTTTGATAATCTTAAATGCACAAAAGAAGGTTTAAGCTCCGAGCAAGTACAGGAGAGGCTAGACTTGTTTGGATACAATAAACTTGAAGAAAAGAAGAACAAACCTGGAGATTATCAAGATTTTGCTGGCATAATTATTTTGCTACTTATAAACTCTACCATCAGTTTCATAGAAGAAAACAATGCTGGTAATGCAGCTGCAGCCCTTATGGCAAGACTGGCCCCAAAAGCAAAGGTACTCCGTGATGGAAAATGGAGTGAAGAAGATGCTGCAGTGTTGGTCCCTGGAGACATAGTTAGCATCAAGCTAGGAGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTCACAAAACATCCTGGAGATGGAGTATATTCTGGTTCAACTTGCAAGCAAGGAGAAATTGAGGCCATAGTTATTGCAACTGGAGTTCACACATTTTTTGGGAAGGCAGCTCATCTTGTGGAAAACACAACACATGTTGGACATTTCCAGAAGGTTCTGACATCTATTGGGAATTTCTGCATCTGCTCAATTGCTATTGGGATGGTATTTGAAATCATTGTGATATATGGGATCCACGGAAGGGGATACCGAAATGGTATCGACAACCTTCTTGTGCTACTGATTGGTGGGATCCCTATTGCAATGCCAACTGTCCTTTCTGTTACAATGGCTATTGGTTCACACAAGTTGTCTCAGCAGGGTGCCATAACAAAGAGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTGTTATGTAGTGACAAAACAGGCACATTAACTCTCAACAAGCTTACAGTTTTTGCCAAAGGTGTTGACAAGGATATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTGGAAAACCAGGATGCAATTGATTGTGCAATCGTTTCGATGTTGGCAGACCCAAAGGAGGCACGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACTGATAAAAGAACTGCACTTACATACATTGATGCTGCTGGTAATATGCACAGGGTTAGCAAAGGTGCACCAGAACAGATTCTCAATCTTGCATATAACAAAGCAGAAATTAGACAGAAGGTTCATGCAATTATTGACAAGTTCGCAGAACGCGGACTTCGTTCTCTTGCAGTTGCTCATCAGAAAGTACCTGAGGGAAATAAAGATAGTCCAGGAGGACCATGGGAGTTTGCTGGCCTTCTCCCTCTTTTTGACCCTCCTCGCCATGATAGTGCAGAAACAATCAGAAGAGCTCTTGATCTTGGTGTGAGTGTCAAAATGATCACTGATACTGATGCTATAGAAAAACTTTCAGGTGATCAACTGGCAATAGGTAAGGAAACAGGAAGGCGTCTAGGGATGGGCACTAACATGTATCCTTCTTCATCACTGCTTGGAGAAAATAAAGAGGGATTAGGTGCTGTCTCCGTTGATGATCTCATTGAGAATGCTGATGGTTTTGCTGGTGTCTTTCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCTGCCCTAAAGATAGCTGACATAGGTATCGCCGTAGCAGATTCTACAGATGCTGCCCGAAGTGCTGCCGACATAGTGCTCACAGAACCTGGCTTGAGTGTCATCATAAGTGCAATATATGCTGTATCTATTACTATTCGTATCGTGCTGGGTTTCATGTTACTTAACTGCTTTTGGAGTTTTGACTTTCCCCCCTTTATGGTTCTTATCATTGCAATTCTCAATGATGGTACCATCATGACAATATCTAAAGATAGAGTTAAGCCTTCTCCACTTCCTGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGGTTATTCTTGGTACCTATCTGGCTCTAATGACAAACCATTTTGGTGTGAGACACTTCCGCCCCACTCTAGAGGCTCCTGTCACTGATGAAATGAAAGAGATGTTGGCTTCTGCCGTCTATCTTCAAGTCAGTACAATTAGTCAAGCCTTGATCTTTGTGACACGCTCCCGGGGTTGGTCCTACGCAGAAAGACCTGGTCTTTTGCTTGTTTGTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGTTATATCAGCCACTGCCACTTGGAAAATTGCTGGAATCAGAAGCATAGGTTGGGGATGGACAGGAGTCATTTGGTTGTTCAATACTGTAACTTATGTTTTCCTGGATCCTTTGAAGTTTGCGGTTCGATATGCATTAAGTGGAAGGGCTTGGAATCTGGTGGTGAACCAACGAACAGCATTCACCAACAAGAATGACTTTGGTAAAGAAGCTCGTGAGGCTGCATGGGCTGCTGAGCAGAGAACCTTGCATGGCCTTCACTCTGCTGCTGAGTCCAAAACCTTTGGAGAGAAACACACCTTCAGAGAAATCAATACATTGGCAGAAGAGGCTAGGAGGAGAGCAGAGTTGGCAAGGTTGAGAGAGCTTCACACTCTGAAAGGAAGAGTGGAATCGTTTGCCAAGCTAAGGGGTTTGGACATTGATGCTATGAATGGCCACTACACTGTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02041	39164	46187	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01535	PMA1, PMA2	EC:3.6.3.6	Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0006754 ATP biosynthetic process

cellular_component GO:0016021 integral component of membrane molecular_function GO:0000166 nucleotide binding GO:0016887 ATPase activity GO:0046872 metal ion binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002041s00029895.1	PF00690.21	Cation_ATPase_N	15	56	8.10E-08
Glyur002041s00029895.1	PF00122.15	E1-E2_ATPase	64	273	4.60E-47
Glyur002041s00029895.1	PF00702.21	Hydrolase	277	555	2.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.243
SRR1783600	control	0.313
SRR1783602	moderate drought stress	0.149
SRR1811619	moderate drought stress	0.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.038
DRR006520	Root Summer glycyrrhizin high producing strain	0.034
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.121
DRR006524	Root Summer glycyrrhizin low producing strain	0.124
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.107
SRR2868004	Drought Stress(Tissue:root)	0.068
SRR2967015	Control (Tissue:root)	0.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.025
SRR9715740	Leave	0.069
SRR9715741	Leave	0.095
SRR9715739	Root	0.037
SRR9715742	Root	0.052
SRR9715743	Root	0.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.045
SRR8749028	MeJA induced 9h	0.058
SRR8749029	MeJA induced 9h	0.030
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.053
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.064
SRR8400027	Control-Root	0.028