Gene detail information of Glyur002045s00039432.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15130.1 | 4.00E-13 | phosphorylcholine cytidylyltransferase2 |
| NR | XP_007145979.1 | 5.70E-22 | hypothetical protein PHAVU_006G002900g [Phaseolus vulgaris] |
| Swissprot | tr|F4JJE0|CCT2_ARATH | 5.00E-15 | Choline-phosphate cytidylyltransferase 2 |
| trEMBL | tr|V7BLR6|V7BLR6_PHAVU | 2.00E-22 | Uncharacterized protein {ECO:0000313|EMBL:ESW17973.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02045 | 38575 | 40751 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00968 | PCYT1 | EC:2.7.7.15 | Glycerophospholipid metabolism | map00564 |
| Phosphonate and phosphinate metabolism | map00440 | |||
| Choline metabolism in cancer | map05231 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.295 |
| SRR1783600 | control | 0.278 |
| SRR1783602 | moderate drought stress | 0.204 |
| SRR1811619 | moderate drought stress | 0.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.735 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.710 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.087 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.801 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.426 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.389 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.410 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.814 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.696 |
| SRR2967015 | Control (Tissue:root) | 3.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.094 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.030 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.749 |
| SRR8749028 | MeJA induced 9h | 8.814 |
| SRR8749029 | MeJA induced 9h | 7.689 |
| SRR8749030 | Uninduced | 1.459 |
| SRR8749031 | Uninduced | 3.046 |
| SRR8749032 | Uninduced | 1.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.531 |
| SRR8400027 | Control-Root | 0.341 |