Gene detail information of Glyur002063s00039888.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01500.1 | 8.00E-76 | carbonic anhydrase 1 |
| NR | KHN26874.1 | 3.42E-114 | Carbonic anhydrase, chloroplastic [Glycine soja] |
| COG | YP_004678364.1 | 2.00E-39 | carbonic anhydrase [Hyphomicrobium sp. MC1] |
| Swissprot | tr|P46513|CAH2_FLALI | 7.00E-99 | Carbonic anhydrase 2 (Fragment) |
| trEMBL | tr|I1KXF9|I1KXF9_SOYBN | 8.00E-110 | Carbonic anhydrase {ECO:0000256|RuleBase:RU003956} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02063 | 37624 | 42963 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01673 | cynT, can | EC:4.2.1.1 | Nitrogen metabolism | map00910 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002063s00039888.1 | PF00484.14 | Pro_CA | 26 | 164 | 1.70E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.836 |
| SRR1783600 | control | 22.619 |
| SRR1783602 | moderate drought stress | 8.898 |
| SRR1811619 | moderate drought stress | 8.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.249 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.533 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.212 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.126 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.513 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 97.268 |
| SRR2868004 | Drought Stress(Tissue:root) | 68.376 |
| SRR2967015 | Control (Tissue:root) | 60.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.046 |
| SRR9715740 | Leave | 19.474 |
| SRR9715741 | Leave | 15.385 |
| SRR9715739 | Root | 3.229 |
| SRR9715742 | Root | 3.202 |
| SRR9715743 | Root | 2.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.061 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 38.783 |
| SRR8400027 | Control-Root | 38.403 |