Gene detail

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Gene detail information of Glyur002065s00035684.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24800.1	7.00E-112	Peroxidase superfamily protein
NR	XP_003550235.1	0	PREDICTED: peroxidase 46-like [Glycine max]
Swissprot	tr\|Q9SK52\|PER18_ARATH	2.00E-145	Peroxidase 18 (Precursor)
trEMBL	tr\|K7MNB4\|K7MNB4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G33730.2}

Sequence

Transcript Sequence

>Glyur002065s00035684.1
ATGGAGAAAAGAGCAGTGGTTTTTCATTTTCCCATTTCAGTCTCTTGTATTTTTATCTTCTTTTTAGCTGNATCTGTTTCAGCTAGCCTAGTTTTCAACTTCTATGCAGCTTCATGCCCAACAGCAGAATTTGTTGTGAGATACACAGTGAGCTCATTATCTTCTTCTGATCCTTCAGTTCCTGGGAAGCTCCTTCGTTTGGTTTTTCATGATTGCTTCGTGGAGGGATGTGATGCTTCTTTGATGCTACAAGGGAATAACACAGAGCAAAGTGATCCAGCAAACAGGTCTGTGGAAGGATATTCAGTTATAGAATCAGCAAAAAGAGTCCTTGAGATGTTTTGTCCTGGAACAGTTTCTTGTGCTGACATAATTGCTTTGGCGGCTAGAGATGCTGTTGCAATTGTTGGTGGTCCTATGGTTCCAATTCCCACAGGTAGGAGAGATGGAATGGTTTCAGTTGCTTCAAATGTCAGACCCAACATTGTGGACACTAGTTTTACAATGGATGAGATGATTAACCGCTTCTCTGCCAAAGGATTGTCCTTACTTGATCTTGTCACCCTTTCAGGAGNTCACACCATAGGAACAGCTCATTGCAGCTCATTCAGAGATCGCTTCCAAGAAGACTCCAAGGGAAAGCTTATGCTCATTGACAAAAGCCTTGACAGTAGCTATGCAGATGAACTAATGAAAGAGTGCCCCATAAGTGCAAGCCCATTTGCAAAAGTGAACAATGATCCTGTAACATCTATGATCTTTGACAACCAGCACTACCGAAATCTTCTCACCAACAAGGGTCTGTTCAAATCTGATTCTGTCTTGTTAGATGATGATAGAACAAGGAAATTGGTGGAGGACTTGGCAAATGATCAAGACCTTTTTTTTGAACATTGGGGTCAGTCTTTCTTGAAGCTCACCAGTGTTGGAGTCAAAACAGGCGATGAGGGTGAGATTCGGNGTTCTTGTGCAGCAACAAATGCATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02065	15483	17132	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function GO:0004601 peroxidase activity GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002065s00035684.1	PF00141.18	peroxidase	47	291	5.90E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.092
SRR1783600	control	0.134
SRR1783602	moderate drought stress	0.287
SRR1811619	moderate drought stress	0.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.155
DRR006522	Root Winter glycyrrhizin high producing strain	0.217
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.111
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.380
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.172
SRR2868004	Drought Stress(Tissue:root)	0.571
SRR2967015	Control (Tissue:root)	0.309

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.157
SRR9715740	Leave	0.564
SRR9715741	Leave	0.599
SRR9715739	Root	0.076
SRR9715742	Root	0.186
SRR9715743	Root	0.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.203
SRR8749028	MeJA induced 9h	0.972
SRR8749029	MeJA induced 9h	1.113
SRR8749030	Uninduced	0.547
SRR8749031	Uninduced	3.447
SRR8749032	Uninduced	6.200

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.749
SRR8400027	Control-Root	1.192