Gene detail information of Glyur002066s00031958.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16850.1 | 9.00E-132 | Pectin lyase-like superfamily protein |
| NR | XP_006588584.1 | 0 | PREDICTED: probable polygalacturonase-like [Glycine max] |
| COG | YP_001179193.1 | 3.00E-56 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 8.00E-130 | Probable polygalacturonase |
| trEMBL | tr|I1L7S8|I1L7S8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G02030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02066 | 6953 | 10752 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002066s00031958.2 | PF00295.12 | Glyco_hydro_28 | 129 | 399 | 1.90E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.118 |
| SRR1783600 | control | 13.900 |
| SRR1783602 | moderate drought stress | 16.805 |
| SRR1811619 | moderate drought stress | 16.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.876 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.362 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.385 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.361 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.484 |
| SRR2868004 | Drought Stress(Tissue:root) | 33.892 |
| SRR2967015 | Control (Tissue:root) | 32.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.359 |
| SRR9715740 | Leave | 7.168 |
| SRR9715741 | Leave | 9.147 |
| SRR9715739 | Root | 6.796 |
| SRR9715742 | Root | 9.800 |
| SRR9715743 | Root | 9.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.553 |
| SRR8749028 | MeJA induced 9h | 11.981 |
| SRR8749029 | MeJA induced 9h | 10.611 |
| SRR8749030 | Uninduced | 11.548 |
| SRR8749031 | Uninduced | 2.461 |
| SRR8749032 | Uninduced | 4.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.869 |
| SRR8400027 | Control-Root | 36.226 |