Gene detail

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Gene detail information of Glyur002081s00034187.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19360.1	0	Nucleotide-diphospho-sugar transferase family protein
NR	KEH30411.1	0	nucleotide-diphospho-sugar transferase family protein [Medicago truncatula]
Swissprot	tr\|Q9ZSJ0\|RGXT2_ARATH	4.00E-09	UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2
trEMBL	tr\|A0A072UM15\|A0A072UM15_MEDTR	0	Nucleotide-diphospho-sugar transferase family protein {ECO:0000313\|EMBL:KEH30411.1}

Sequence

Transcript Sequence

>Glyur002081s00034187.1
ATGATTGGGCGCAGAGATAGAGAGGGACCCTTGATGAGGAACAACGCTCATTCTCTACGCAAATCAAGGATCTTAACCGCCATAGCAATTGGGGTTCTCATTGGATGCATCTTCGCTTTCCTCTTCCCCAATGGCTTCTTCGTTTCTGACTCTGTCACCCCAAATCGCCACCTCTCAGTCGCCGGATCCAAAACCCAGGGAAATTCGGCTGGATGTGAATCCTCAGATCGGGTCAACATGTTGAAATCAGAGTTTGTGGCGGTATTAGAGAAAAATAATGAGCTGAAGAAACAGGCGAGGGAATTGACTGAAAGGCTTCGGCTTGCAGAGCAAGGGAAAGACCAGGCTCAAAAACAGTTTCTTACATTGGGAAAACAGCATAAAGCTGGACCTTTTGGTACTGTGAAGGGGTTAAGAACCAACCCTACTGTTGTTCCCGATGAATCCGTGAACCCGAGATTGGCAAAGATATTAGAGAAAGTCGCAGTTAAACGAGAGCTCATAGTCGCACTTGCAAACTCCAATGTGAAGGAGATGCTCGAGGTCTGGTTCACCAATATCAAGAGAGTTGGTATAACCAATTATCTAGTTGTCGCTTTAGACGATGGGATTGCAAAGTTTTGTGAATCGAATCAAGTCCCATTTTACAAGAGAGACCCAGAAGATGGTATTGATACCATTGGAAAAATAGGAGGGAACCATGCCGTCTCCGGGCTTAAATTCCGTATCCTAAGAGAATTTTTGCAGTTGGGATACAATGTTCTTCTATCAGATGTTGACATTGTATATCTGCAGAATCCTTTTGATCATCTGTACCGGGATTCAGATGTCGAGTCCATGAGTGATGGTCATAATAACATGACGGCTTATGGCTTCAACGATGTCTTCGATGAACCTGCAATGGGNTGGGCTCGATATGCTCATACCATGAGGATATGGGTTTACAACTCTGGTTTCTTCTATATCAGACCAACCATCCCTTCAATNGAGCTTTTGGATCGTGTAGCGACACGGCTTTCCAAGGAGAATGCGTGGGACCAGGCCGTTTTCAACGAGGAACTCTTTTACCCCTCACATCCTGGTTATGATGGACTTCATGCTGCCAGAAGAACCATGGATATGTATCTCTTTATGAACAGCAAGGTTCTGTTCAAGACAGTGAGGAATGATGCNAAGCTCAGCAAATTGAAACCTGTAATTGTTCACGTGAATTACCACCCTGATAAGCTTCCTCGAATGAAAGCAGTTGTTGAATATTATGTTAATGGGAAGCAGGATGCTCTTAAACCTTTCCCTGAAGGCTCAGAGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02081	20689	22700	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT77

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K20783	RRA	EC:2.4.2.-	Other types of O-glycan biosynthesis	map00514

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002081s00034187.1	PF03407.11	Nucleotid_trans	192	413	6.40E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.678
SRR1783600	control	40.688
SRR1783602	moderate drought stress	36.104
SRR1811619	moderate drought stress	32.817

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.680
DRR006520	Root Summer glycyrrhizin high producing strain	28.086
DRR006521	Root Winter glycyrrhizin high producing strain	16.961
DRR006522	Root Winter glycyrrhizin high producing strain	16.724
DRR006523	Root Summer glycyrrhizin low producing strain	35.232
DRR006524	Root Summer glycyrrhizin low producing strain	34.214
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.919
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	43.975
SRR2868004	Drought Stress(Tissue:root)	33.371
SRR2967015	Control (Tissue:root)	31.429

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.891
SRR9715740	Leave	7.367
SRR9715741	Leave	6.953
SRR9715739	Root	40.060
SRR9715742	Root	29.166
SRR9715743	Root	27.257

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.200
SRR8749028	MeJA induced 9h	29.325
SRR8749029	MeJA induced 9h	29.817
SRR8749030	Uninduced	24.718
SRR8749031	Uninduced	19.992
SRR8749032	Uninduced	13.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	36.704
SRR8400027	Control-Root	36.553