Gene detail information of Glyur002082s00036163.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17660.1 | 8.00E-09 | tRNA (guanine-N-7) methyltransferase |
| NR | KEH25354.1 | 1.65E-30 | phosphoglycerate kinase [Medicago truncatula] |
| trEMBL | tr|A0A072U6K3|A0A072U6K3_MEDTR | 6.00E-31 | Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02082 | 5475 | 6226 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00927 | PGK, pgk | EC:2.7.2.3 | Carbon metabolism | map01200 |
| Biosynthesis of amino acids | map01230 | |||
| Glycolysis / Gluconeogenesis | map00010 | |||
| Carbon fixation in photosynthetic organisms | map00710 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.714 |
| SRR1783600 | control | 0.924 |
| SRR1783602 | moderate drought stress | 3.888 |
| SRR1811619 | moderate drought stress | 3.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.846 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.587 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.813 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.996 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.905 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.986 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.883 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.427 |
| SRR2967015 | Control (Tissue:root) | 4.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.849 |
| SRR9715740 | Leave | 11.116 |
| SRR9715741 | Leave | 6.506 |
| SRR9715739 | Root | 1.862 |
| SRR9715742 | Root | 2.708 |
| SRR9715743 | Root | 2.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.724 |
| SRR8749028 | MeJA induced 9h | 5.629 |
| SRR8749029 | MeJA induced 9h | 2.679 |
| SRR8749030 | Uninduced | 3.425 |
| SRR8749031 | Uninduced | 1.495 |
| SRR8749032 | Uninduced | 1.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.206 |
| SRR8400027 | Control-Root | 7.053 |