Gene detail information of Glyur002086s00043342.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G53240.11.00E-08Lactate/malate dehydrogenase family protein
NRXP_006392811.16.91E-14hypothetical protein EUTSA_v10011552mg [Eutrema salsugineum]
Swissprottr|P17783|MDHM_CITLA2.00E-10Malate dehydrogenase, mitochondrial (Precursor)
trEMBLtr|V4KJM0|V4KJM0_EUTSA3.00E-14Uncharacterized protein {ECO:0000313|EMBL:ESQ30097.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold020862133723562+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00026MDH2 EC:1.1.1.37 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002086s00043342.1PF00056.18Ldh_1_N1343.60E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.925
SRR1783600control5.343
SRR1783602moderate drought stress10.936
SRR1811619moderate drought stress10.281

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.555
DRR006520Root Summer glycyrrhizin high producing strain3.202
DRR006521Root Winter glycyrrhizin high producing strain0.239
DRR006522Root Winter glycyrrhizin high producing strain0.689
DRR006523Root Summer glycyrrhizin low producing strain6.760
DRR006524Root Summer glycyrrhizin low producing strain9.068
DRR006525Leaf Summer glycyrrhizin high producing strain2.928
DRR006526Leaf Summer glycyrrhizin high producing strain2.126

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.868
SRR2868004Drought Stress(Tissue:root)3.268
SRR2967015Control (Tissue:root)3.619

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.797
SRR9715740Leave1.375
SRR9715741Leave2.851
SRR9715739Root0.613
SRR9715742Root2.321
SRR9715743Root1.853

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.673
SRR8749028MeJA induced 9h2.443
SRR8749029MeJA induced 9h0.786
SRR8749030Uninduced0.041
SRR8749031Uninduced0.234
SRR8749032Uninduced0.326

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.586
SRR8400027Control-Root1.633

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved