Gene detail information of Glyur002099s00030879.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35550.1 | 4.00E-59 | WUSCHEL related homeobox 13 |
| NR | XP_007136031.1 | 2.08E-129 | hypothetical protein PHAVU_009G012200g [Phaseolus vulgaris] |
| Swissprot | tr|Q5QMM3|WOX8_ORYSJ | 1.00E-73 | WUSCHEL-related homeobox 8 |
| trEMBL | tr|V7ART8|V7ART8_PHAVU | 8.00E-130 | Uncharacterized protein {ECO:0000313|EMBL:ESW08025.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02099 | 6947 | 9378 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002099s00030879.1 | PF00046.24 | Homeobox | 123 | 183 | 1.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.486 |
| SRR1783600 | control | 19.641 |
| SRR1783602 | moderate drought stress | 7.395 |
| SRR1811619 | moderate drought stress | 7.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.571 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.648 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.210 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.544 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.879 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.320 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.339 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.502 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.737 |
| SRR2967015 | Control (Tissue:root) | 18.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.253 |
| SRR9715740 | Leave | 2.948 |
| SRR9715741 | Leave | 3.769 |
| SRR9715739 | Root | 3.092 |
| SRR9715742 | Root | 4.666 |
| SRR9715743 | Root | 5.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.953 |
| SRR8749028 | MeJA induced 9h | 33.289 |
| SRR8749029 | MeJA induced 9h | 64.156 |
| SRR8749030 | Uninduced | 16.069 |
| SRR8749031 | Uninduced | 15.200 |
| SRR8749032 | Uninduced | 18.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.137 |
| SRR8400027 | Control-Root | 32.921 |