Gene detail information of Glyur002099s00030882.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76390.20ARM repeat superfamily protein
NRKEH36342.10senescence-associated E3 ubiquitin ligase [Medicago truncatula]
COGYP_001957949.11.00E-07hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9SFX2|PUB43_ARATH0U-box domain-containing protein 43
trEMBLtr|A0A072V3E2|A0A072V3E2_MEDTR0Senescence-associated E3 ubiquitin ligase {ECO:0000313|EMBL:KEH36342.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold020992791932620+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002099s00030882.1PF04564.10U-box321062.10E-13
Glyur002099s00030882.1PF13646.1HEAT_26897981.40E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.958
SRR1783600control10.998
SRR1783602moderate drought stress11.180
SRR1811619moderate drought stress11.150

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.416
DRR006520Root Summer glycyrrhizin high producing strain23.056
DRR006521Root Winter glycyrrhizin high producing strain26.772
DRR006522Root Winter glycyrrhizin high producing strain26.088
DRR006523Root Summer glycyrrhizin low producing strain30.737
DRR006524Root Summer glycyrrhizin low producing strain31.121
DRR006525Leaf Summer glycyrrhizin high producing strain27.459
DRR006526Leaf Summer glycyrrhizin high producing strain27.437

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.218
SRR2868004Drought Stress(Tissue:root)23.245
SRR2967015Control (Tissue:root)24.921

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.617
SRR9715740Leave18.216
SRR9715741Leave23.051
SRR9715739Root16.242
SRR9715742Root20.470
SRR9715743Root20.297

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.144
SRR8749028MeJA induced 9h21.600
SRR8749029MeJA induced 9h15.220
SRR8749030Uninduced25.660
SRR8749031Uninduced24.160
SRR8749032Uninduced19.170

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.524
SRR8400027Control-Root16.018

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved