Gene detail information of Glyur002099s00030883.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G42350.10Galactose oxidase/kelch repeat superfamily protein
NRXP_003523036.10PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max]
Swissprottr|Q9FII2|FK117_ARATH0F-box/kelch-repeat protein At5g42350
trEMBLtr|I1JST5|I1JST5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G01800.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold020993451237113-


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002099s00030883.1PF00646.28F-box1491851.90E-09
Glyur002099s00030883.1PF01344.20Kelch_12352899.50E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.113
SRR1783600control15.510
SRR1783602moderate drought stress17.328
SRR1811619moderate drought stress16.718

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.991
DRR006520Root Summer glycyrrhizin high producing strain25.758
DRR006521Root Winter glycyrrhizin high producing strain22.968
DRR006522Root Winter glycyrrhizin high producing strain22.261
DRR006523Root Summer glycyrrhizin low producing strain24.102
DRR006524Root Summer glycyrrhizin low producing strain23.592
DRR006525Leaf Summer glycyrrhizin high producing strain10.233
DRR006526Leaf Summer glycyrrhizin high producing strain10.423

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)43.759
SRR2868004Drought Stress(Tissue:root)40.879
SRR2967015Control (Tissue:root)39.972

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.136
SRR9715740Leave19.087
SRR9715741Leave20.558
SRR9715739Root12.112
SRR9715742Root27.620
SRR9715743Root25.607

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.935
SRR8749028MeJA induced 9h20.288
SRR8749029MeJA induced 9h10.117
SRR8749030Uninduced14.037
SRR8749031Uninduced7.158
SRR8749032Uninduced7.960

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.950
SRR8400027Control-Root44.471

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved