Gene detail information of Glyur002103s00033476.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10520.10DNA polymerase lambda (POLL)
NRXP_004516776.10PREDICTED: DNA polymerase lambda-like isoform X1 [Cicer arietinum]
COGNP_275693.12.00E-17DNA-dependent DNA polymerase X protein [Methanothermobacter thermautotrophicus str. Delta H]
trEMBLtr|A0A072TY09|A0A072TY09_MEDTR0DNA polymerase lambda-like protein {ECO:0000313|EMBL:KEH22317.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold021031133418000-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03512POLL EC:2.7.7.7 4.2.99.- Base excision repair map03410
Non-homologous end-joiningmap03450


Gene Ontology

biological_process

GO:0006281  DNA repair


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003887  DNA-directed DNA polymerase activity

GO:0016779  nucleotidyltransferase activity

GO:0034061  DNA polymerase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002103s00033476.1PF14716.1HHH_81752395.80E-15
Glyur002103s00033476.1PF10391.4DNA_pol_lambd_f2593096.00E-18
Glyur002103s00033476.1PF14792.1DNA_pol_B_palm3104244.70E-30
Glyur002103s00033476.1PF14791.1DNA_pol_B_thumb4305025.90E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.415
SRR1783600control3.336
SRR1783602moderate drought stress3.142
SRR1811619moderate drought stress3.523

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.547
DRR006520Root Summer glycyrrhizin high producing strain7.012
DRR006521Root Winter glycyrrhizin high producing strain2.152
DRR006522Root Winter glycyrrhizin high producing strain2.160
DRR006523Root Summer glycyrrhizin low producing strain4.487
DRR006524Root Summer glycyrrhizin low producing strain4.421
DRR006525Leaf Summer glycyrrhizin high producing strain2.378
DRR006526Leaf Summer glycyrrhizin high producing strain2.106

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.513
SRR2868004Drought Stress(Tissue:root)8.697
SRR2967015Control (Tissue:root)7.534

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.220
SRR9715740Leave0.841
SRR9715741Leave0.918
SRR9715739Root0.809
SRR9715742Root2.094
SRR9715743Root3.037

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.305
SRR8749028MeJA induced 9h4.281
SRR8749029MeJA induced 9h6.103
SRR8749030Uninduced2.927
SRR8749031Uninduced3.104
SRR8749032Uninduced1.972

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.276
SRR8400027Control-Root13.058

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved