Gene detail information of Glyur002106s00040037.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47360.1 | 3.00E-107 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004515635.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Cicer arietinum] |
| Swissprot | tr|Q9LVS3|PP422_ARATH | 9.00E-136 | Pentatricopeptide repeat-containing protein At5g47360 |
| trEMBL | tr|V7ACP5|V7ACP5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03282.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02106 | 28089 | 39521 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002106s00040037.2 | PF07911.8 | DUF1677 | 6 | 70 | 5.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.861 |
| SRR1783600 | control | 5.881 |
| SRR1783602 | moderate drought stress | 6.892 |
| SRR1811619 | moderate drought stress | 6.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.089 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.138 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.919 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.809 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.121 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.054 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.492 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.628 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.466 |
| SRR2967015 | Control (Tissue:root) | 10.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.373 |
| SRR9715740 | Leave | 4.967 |
| SRR9715741 | Leave | 5.741 |
| SRR9715739 | Root | 1.524 |
| SRR9715742 | Root | 4.815 |
| SRR9715743 | Root | 4.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.930 |
| SRR8749028 | MeJA induced 9h | 5.596 |
| SRR8749029 | MeJA induced 9h | 3.043 |
| SRR8749030 | Uninduced | 2.380 |
| SRR8749031 | Uninduced | 5.704 |
| SRR8749032 | Uninduced | 2.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.034 |
| SRR8400027 | Control-Root | 10.726 |