Gene detail information of Glyur002108s00034778.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRATCG00020.17.00E-07photosystem II reaction center protein A
NRCAE01439.12.65E-09photosystem II reaction center protein D1 [Pavlova gyrans]
Swissprottr|Q9TNF7|PSBA_DUMHI3.00E-11Photosystem II protein D1 {ECO:0000255|HAMAP-Rule:MF_01379} (Precursor)
trEMBLtr|Q2WEF2|Q2WEF2_9EUKA1.00E-09Photosystem Q(B) protein {ECO:0000256|RuleBase:RU004332} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0210865347106-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02703psbA EC:1.10.3.9 Photosynthesis map00195


Gene Ontology

biological_process

GO:0009772  photosynthetic electron transport in photosystem II

GO:0019684  photosynthesis, light reaction


molecular_function

GO:0045156  electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.000
SRR1783600control0.000
SRR1783602moderate drought stress0.000
SRR1811619moderate drought stress0.000

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.000
SRR2868004Drought Stress(Tissue:root)0.000
SRR2967015Control (Tissue:root)0.000

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.000
SRR9715741Leave0.000
SRR9715739Root0.000
SRR9715742Root0.000
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.000
SRR8400027Control-Root0.000