Gene detail information of Glyur002109s00041229.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004501037.1 | 1.35E-31 | PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Cicer arietinum] |
| trEMBL | tr|V7ASK8|V7ASK8_PHAVU | 3.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:ESW08569.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02109 | 4656 | 5851 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01246 | tag | EC:3.2.2.20 | Base excision repair | map03410 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.119 |
| SRR1783600 | control | 1.914 |
| SRR1783602 | moderate drought stress | 2.769 |
| SRR1811619 | moderate drought stress | 2.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.684 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.585 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.312 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.151 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.215 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.054 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.131 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.774 |
| SRR2967015 | Control (Tissue:root) | 6.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.635 |
| SRR9715740 | Leave | 2.755 |
| SRR9715741 | Leave | 6.816 |
| SRR9715739 | Root | 1.921 |
| SRR9715742 | Root | 3.423 |
| SRR9715743 | Root | 2.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.159 |
| SRR8749028 | MeJA induced 9h | 3.623 |
| SRR8749029 | MeJA induced 9h | 3.219 |
| SRR8749030 | Uninduced | 0.221 |
| SRR8749031 | Uninduced | 0.214 |
| SRR8749032 | Uninduced | 0.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.769 |
| SRR8400027 | Control-Root | 11.046 |