Gene detail information of Glyur002109s00041234.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06060.1 | 7.00E-86 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH34739.1 | 2.18E-136 | NAD(P)-binding rossmann-fold protein [Medicago truncatula] |
| COG | YP_004658067.1 | 9.00E-71 | Tropinone reductase I [Runella slithyformis DSM 19594] |
| Swissprot | tr|Q9ASX2|TRNH1_ARATH | 2.00E-89 | Tropinone reductase homolog At1g07440 |
| trEMBL | tr|A0A072UY55|A0A072UY55_MEDTR | 8.00E-137 | NAD(P)-binding rossmann-fold protein {ECO:0000313|EMBL:KEH34739.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02109 | 34952 | 38972 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08081 | TR1 | EC:1.1.1.206 | Tropane, piperidine and pyridine alkaloid biosynthesis | map00960 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002109s00041234.1 | PF13561.1 | adh_short_C2 | 54 | 218 | 3.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.943 |
| SRR1783600 | control | 3.087 |
| SRR1783602 | moderate drought stress | 3.094 |
| SRR1811619 | moderate drought stress | 3.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.988 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.213 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.923 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.934 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.407 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.633 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.319 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.105 |
| SRR2967015 | Control (Tissue:root) | 0.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.949 |
| SRR9715740 | Leave | 1.437 |
| SRR9715741 | Leave | 1.367 |
| SRR9715739 | Root | 0.060 |
| SRR9715742 | Root | 0.356 |
| SRR9715743 | Root | 0.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.039 |
| SRR8749028 | MeJA induced 9h | 1.532 |
| SRR8749029 | MeJA induced 9h | 0.983 |
| SRR8749030 | Uninduced | 0.553 |
| SRR8749031 | Uninduced | 0.110 |
| SRR8749032 | Uninduced | 1.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.183 |
| SRR8400027 | Control-Root | 0.364 |