Gene detail information of Glyur002121s00033333.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12890.1 | 2.00E-21 | Integrase-type DNA-binding superfamily protein |
| NR | KEH43599.1 | 1.55E-69 | DNA-binding domain protein [Medicago truncatula] |
| Swissprot | tr|Q3E703|ERF88_ARATH | 5.00E-27 | Ethylene-responsive transcription factor ERF088 |
| trEMBL | tr|A0A072VNJ7|A0A072VNJ7_MEDTR | 6.00E-70 | DNA-binding domain protein {ECO:0000313|EMBL:KEH43599.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02121 | 20287 | 20706 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002121s00033333.1 | PF00847.15 | AP2 | 23 | 65 | 1.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.024 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.161 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.063 |
| SRR2967015 | Control (Tissue:root) | 1.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 129.694 |
| SRR8749028 | MeJA induced 9h | 60.422 |
| SRR8749029 | MeJA induced 9h | 45.959 |
| SRR8749030 | Uninduced | 5.591 |
| SRR8749031 | Uninduced | 0.859 |
| SRR8749032 | Uninduced | 0.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.139 |
| SRR8400027 | Control-Root | 0.049 |