Gene detail information of Glyur002123s00028290.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G20330.11.00E-125PYRIMIDINE B
NRXP_003519591.10PREDICTED: aspartate carbamoyltransferase 1, chloroplastic-like isoform X1 [Glycine max]
COGYP_003589202.11.00E-93aspartate carbamoyltransferase [Kyrpidia tusciae DSM 2912]
Swissprottr|Q43086|PYRB1_PEA0Aspartate carbamoyltransferase 1, chloroplastic (Precursor)
trEMBLtr|I1JJC4|I1JJC4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G46290.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold021231538617998-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00609pyrB, PYR2 EC:2.1.3.2 Pyrimidine metabolism map00240
Alanine, aspartate and glutamate metabolismmap00250


Gene Ontology

biological_process

GO:0006207  'de novo' pyrimidine nucleobase biosynthetic process

GO:0006520  cellular amino acid metabolic process


molecular_function

GO:0004070  aspartate carbamoyltransferase activity

GO:0016597  amino acid binding

GO:0016743  carboxyl- or carbamoyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002123s00028290.1PF02729.16OTCace_N852281.10E-44
Glyur002123s00028290.1PF00185.19OTCace2343479.70E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.119
SRR1783600control0.151
SRR1783602moderate drought stress0.250
SRR1811619moderate drought stress0.288

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.453
DRR006520Root Summer glycyrrhizin high producing strain1.411
DRR006521Root Winter glycyrrhizin high producing strain6.119
DRR006522Root Winter glycyrrhizin high producing strain5.616
DRR006523Root Summer glycyrrhizin low producing strain4.131
DRR006524Root Summer glycyrrhizin low producing strain3.789
DRR006525Leaf Summer glycyrrhizin high producing strain6.362
DRR006526Leaf Summer glycyrrhizin high producing strain6.360

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.870
SRR2868004Drought Stress(Tissue:root)11.180
SRR2967015Control (Tissue:root)12.057

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.414
SRR9715740Leave7.939
SRR9715741Leave7.218
SRR9715739Root0.469
SRR9715742Root0.914
SRR9715743Root0.691

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.257
SRR8749028MeJA induced 9h5.975
SRR8749029MeJA induced 9h5.920
SRR8749030Uninduced4.457
SRR8749031Uninduced2.397
SRR8749032Uninduced1.669

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.819
SRR8400027Control-Root2.099

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved