Gene detail information of Glyur002125s00039222.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06510.2 | 7.00E-40 | nuclear factor Y, subunit A10 |
| NR | XP_004497643.1 | 8.29E-170 | PREDICTED: nuclear transcription factor Y subunit A-2-like [Cicer arietinum] |
| Swissprot | tr|Q8LFU0|NFYAA_ARATH | 6.00E-53 | Nuclear transcription factor Y subunit A-10 |
| trEMBL | tr|B3IX33|B3IX33_LOTJA | 2.00E-167 | Transcription factor CCAAT {ECO:0000313|EMBL:BAG50060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02125 | 2918 | 8951 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002125s00039222.1 | PF02045.10 | CBFB_NFYA | 198 | 242 | 2.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.016 |
| SRR1783600 | control | 0.033 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.099 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.487 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.394 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.969 |
| SRR2967015 | Control (Tissue:root) | 11.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.644 |
| SRR9715740 | Leave | 1.261 |
| SRR9715741 | Leave | 0.683 |
| SRR9715739 | Root | 1.603 |
| SRR9715742 | Root | 0.704 |
| SRR9715743 | Root | 0.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.304 |
| SRR8749028 | MeJA induced 9h | 0.057 |
| SRR8749029 | MeJA induced 9h | 0.002 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.069 |
| SRR8749032 | Uninduced | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.110 |
| SRR8400027 | Control-Root | 4.416 |