Gene detail information of Glyur002125s00039226.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35910.1 | 7.00E-27 | RING/U-box superfamily protein |
| NR | XP_004497640.1 | 5.53E-77 | PREDICTED: RING-H2 finger protein ATL70-like [Cicer arietinum] |
| Swissprot | tr|Q8RX29|ATL70_ARATH | 5.00E-55 | RING-H2 finger protein ATL70 |
| trEMBL | tr|V7CXQ6|V7CXQ6_PHAVU | 4.00E-76 | Uncharacterized protein {ECO:0000313|EMBL:ESW34982.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02125 | 42546 | 43097 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002125s00039226.1 | PF13639.1 | zf-RING_2 | 116 | 158 | 1.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.401 |
| SRR1783600 | control | 5.523 |
| SRR1783602 | moderate drought stress | 5.764 |
| SRR1811619 | moderate drought stress | 6.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.197 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.200 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.031 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.931 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.327 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.944 |
| SRR2967015 | Control (Tissue:root) | 14.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.573 |
| SRR9715740 | Leave | 1.772 |
| SRR9715741 | Leave | 0.829 |
| SRR9715739 | Root | 3.286 |
| SRR9715742 | Root | 1.147 |
| SRR9715743 | Root | 1.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.701 |
| SRR8749028 | MeJA induced 9h | 87.944 |
| SRR8749029 | MeJA induced 9h | 50.430 |
| SRR8749030 | Uninduced | 45.717 |
| SRR8749031 | Uninduced | 28.330 |
| SRR8749032 | Uninduced | 23.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.098 |
| SRR8400027 | Control-Root | 9.957 |