Gene detail information of Glyur002131s00035386.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74960.3 | 3.00E-180 | fatty acid biosynthesis 1 |
| NR | XP_004488123.1 | 0 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Cicer arietinum] |
| COG | YP_004652153.1 | 1.00E-151 | 3-oxoacyl-ACP synthase [Parachlamydia acanthamoebae UV-7] |
| Swissprot | tr|Q9C9P4|KASC2_ARATH | 0 | 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (Precursor) |
| trEMBL | tr|Q5ECI4|Q5ECI4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05200.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02131 | 19707 | 27686 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09458 | fabF | EC:2.3.1.179 | Fatty acid metabolism | map01212 |
| Fatty acid biosynthesis | map00061 | |||
| Biotin metabolism | map00780 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002131s00035386.1 | PF00109.21 | ketoacyl-synt | 77 | 322 | 3.90E-54 |
| Glyur002131s00035386.1 | PF02801.17 | Ketoacyl-synt_C | 330 | 444 | 3.10E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.852 |
| SRR1783600 | control | 1.549 |
| SRR1783602 | moderate drought stress | 3.533 |
| SRR1811619 | moderate drought stress | 3.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.811 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.798 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.355 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.394 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.606 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.819 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.631 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.013 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.571 |
| SRR2967015 | Control (Tissue:root) | 3.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.878 |
| SRR9715740 | Leave | 13.056 |
| SRR9715741 | Leave | 13.839 |
| SRR9715739 | Root | 3.200 |
| SRR9715742 | Root | 2.761 |
| SRR9715743 | Root | 2.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.163 |
| SRR8749028 | MeJA induced 9h | 0.162 |
| SRR8749029 | MeJA induced 9h | 0.687 |
| SRR8749030 | Uninduced | 0.028 |
| SRR8749031 | Uninduced | 0.058 |
| SRR8749032 | Uninduced | 0.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.873 |
| SRR8400027 | Control-Root | 5.712 |