Gene detail

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Gene detail information of Glyur002136s00034528.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08500.1	3.00E-55	myb domain protein 83
NR	KEH33233.1	3.76E-139	myb transcription factor [Medicago truncatula]
Swissprot	tr\|Q9LXV2\|MYB46_ARATH	4.00E-67	Transcription factor MYB46
trEMBL	tr\|A0A072UVZ0\|A0A072UVZ0_MEDTR	1.00E-139	Myb transcription factor {ECO:0000313\|EMBL:KEH33233.1}

Sequence

Transcript Sequence

>Glyur002136s00034528.1
ATGAGGAAACCTGATATGATGGGAAACAAAGAGAGATCAATGAACAACAACAATAGCAACAGCAGCATTAATAATAAGAGCTGCAACAAGCTGAGGAAAGGGTTGTGGTCACCAGAGGAAGATGAGAAGCTGATGAGGTACATGATAACAAAGGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGCAAAAGCTGTCGCCTTCGTTGGATCAATTACTTGAGACCTGATCTCAAGCGTGGTGCTTTCTCACCCCAAGAGGAAGAACTCATCATCCACTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATTGCGGCACGTCTCCCTGGTCGCACAGACAATGAGATCAAGAATTTCTGGAACTCCACACTGAAGAAGAGGCTGAAAACTATGACAAACTCCTCCACTACCCATCCATCCCCAAACAACAGTGACTCCTCTGATCAACCTAGCAGAGACCATGTTTTGGGTGGGAACAACATGGTACCCATTAACGANCATGACATCATGACAATGTACAATATGGACTCCTCTGCCTCATCCACCAATTCATCATCATCATCCATGCAATCCATGCACAACAACATGCATGCCATGGTTTTAGGAGATCATGATCACTTTGATCCCTTTTCCTTGTTGTCCAATAATCGTTATGACATGACCGGTTCAGCCGGTTTCCCTGACAACAACAACAACAACAACATGCCCTCAGCATGCTTAACCCAAGTTTGCAATATGGTAGAGGATGGGCTAAATATCCATAGTGATTATGGGATATTAATGGAGCCTAATAATAATAATAATAATAAGATGGGGTTATTAGAAAACGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCAGCAATATTGAAGACAAAGACAACAACAACAGTACTACCCCCAATATTCTTCAATATCATAATGTGAAAAGCCATAACAACCACCACTTCAATAATAGTTGCTTCAATAACACTGATCATGATCAGAATATTATTCAAAACTCCAATGTAGAGGACTTGTTTGTGGGGTTTGGAAATCATCATGGGGGGCAAGGGGAAAACTTAAGAATGGGAGAATGGGACTTGGAGGGTTTGATGCAAGACATTTCCTTTTTTCCTTCCCTTGATTTCCAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02136	15519	18101	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002136s00034528.1	PF00249.26	Myb_DNA-binding	33	80	1.20E-12
Glyur002136s00034528.1	PF00249.26	Myb_DNA-binding	86	130	4.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.219
SRR1783600	control	0.223
SRR1783602	moderate drought stress	0.126
SRR1811619	moderate drought stress	0.156

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.354
DRR006520	Root Summer glycyrrhizin high producing strain	1.572
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.812
DRR006524	Root Summer glycyrrhizin low producing strain	0.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.101
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.400
SRR2868004	Drought Stress(Tissue:root)	1.209
SRR2967015	Control (Tissue:root)	0.961

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.818
SRR9715740	Leave	0.152
SRR9715741	Leave	0.085
SRR9715739	Root	0.020
SRR9715742	Root	0.133
SRR9715743	Root	0.287

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.101
SRR8749031	Uninduced	0.319
SRR8749032	Uninduced	0.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.806
SRR8400027	Control-Root	1.604