Gene detail information of Glyur002136s00034532.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63530.2 | 6.00E-73 | RING/U-box superfamily protein |
| NR | XP_007133839.1 | 5.22E-145 | hypothetical protein PHAVU_011G213300g [Phaseolus vulgaris] |
| Swissprot | tr|Q8L649|BB_ARATH | 4.00E-90 | E3 ubiquitin ligase BIG BROTHER |
| trEMBL | tr|V7ALU4|V7ALU4_PHAVU | 2.00E-145 | Uncharacterized protein {ECO:0000313|EMBL:ESW05833.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02136 | 28875 | 33825 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002136s00034532.1 | PF13639.1 | zf-RING_2 | 198 | 239 | 1.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.790 |
| SRR1783600 | control | 5.613 |
| SRR1783602 | moderate drought stress | 4.358 |
| SRR1811619 | moderate drought stress | 4.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.822 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.825 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.476 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.494 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.430 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.085 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.582 |
| SRR2967015 | Control (Tissue:root) | 7.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.306 |
| SRR9715740 | Leave | 0.926 |
| SRR9715741 | Leave | 1.412 |
| SRR9715739 | Root | 0.798 |
| SRR9715742 | Root | 4.730 |
| SRR9715743 | Root | 3.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.656 |
| SRR8749028 | MeJA induced 9h | 13.113 |
| SRR8749029 | MeJA induced 9h | 8.473 |
| SRR8749030 | Uninduced | 4.495 |
| SRR8749031 | Uninduced | 0.679 |
| SRR8749032 | Uninduced | 2.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.630 |
| SRR8400027 | Control-Root | 28.130 |