Gene detail information of Glyur002141s00036549.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33100.1 | 0 | cellulose synthase-like D1 |
| NR | XP_004487933.1 | 0 | PREDICTED: cellulose synthase-like protein D1-like [Cicer arietinum] |
| COG | NP_487797.1 | 1.00E-19 | cellulose synthase catalytic subunit [Nostoc sp. PCC 7120] |
| Swissprot | tr|O49323|CSLD1_ARATH | 0 | Cellulose synthase-like protein D1 |
| trEMBL | tr|A0A072V7S9|A0A072V7S9_MEDTR | 0 | Cellulose synthase-like protein {ECO:0000313|EMBL:KEH37378.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02141 | 29647 | 34127 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002141s00036549.1 | PF03552.9 | Cellulose_synt | 316 | 705 | 1.40E-137 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.515 |
| SRR1783600 | control | 1.552 |
| SRR1783602 | moderate drought stress | 0.400 |
| SRR1811619 | moderate drought stress | 0.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.394 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.020 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.194 |
| SRR9715740 | Leave | 0.294 |
| SRR9715741 | Leave | 0.046 |
| SRR9715739 | Root | 0.195 |
| SRR9715742 | Root | 0.175 |
| SRR9715743 | Root | 0.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.193 |
| SRR8400027 | Control-Root | 0.040 |