Gene detail

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Gene detail information of Glyur002146s00039028.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37730.1	2.00E-130	Protein of unknown function (DUF604)
NR	XP_002309080.2	0	hypothetical protein POPTR_0006s09010g [Populus trichocarpa]
trEMBL	tr\|I1N2L0\|I1N2L0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G40350.1}

Sequence

Transcript Sequence

>Glyur002146s00039028.1
ATGTCTACTGCAAAACAAACACAGCAACAGACTTCAATTCCATGGAAACTCCTTGTCTTCTTTAGCGTAGCTCTCGCCACTTCCCTCCTTTTGTTCATCTCTCTCCCCCTCTCCACCGATTTCCACAACAAACCATTCATCCACTTGGTTCAACGCCAAACCATCAACAACAACACCTTTCAGGCCTCCACCGCCGGCGAAGAAGAACCCACCACCAACATCTCCCACATCTTCTTCGGCATCGCCGGTTCCGTCAAGACGTGGCCGAAGCGCCGCCCCTACGTCGANCTCTGGTGGCAACCGAATGTCACCAGAGGCTTCCTCTGGATGGACCAGGGGCCGCCGGAAAACGAGACGTGGCCGGAGACTTCACCGCCGTTCAGAGTCTCCGGCAACACCTCGTCGTTCAAGTACACCTGCAGGTACGGTAACCGGTCAGCTGTTCGCATAGCGCGCATAGTGAAGGAGACCTTCGAGTTAGTGGGGCCCCACAACAACAACGTGAGGTGGTTCGTGATGGGTGANGATGACACCGTGTTCTTCCCCGACAACCTCGTCACGGTTCTGTCGAAATATGATCACAACCAGATGTACTATGTCGGCGCGAACTCCGAGAGTGTNGAACAGGACGCGATATTCTCCTACGCCGTGGCGTACGGCGGTGGAGGGTTCGCCGTCAGTTACCCTTTGGCGGCGGAGCTTGCTAGAATCTTGGACGGTTGCATAGACCGTTACGCCCAACTCTACGGCGGTGACCAGAAGGTTCAGGCTTGCATCAGTGAGATTGGCGTGCCATTGACCAAAGAGCTTGGCTTTCATCAATCCATCAAAAAGTTGGTTGGAGCATATAAGATGGACCCGGGTCGGGTACTGGAGCACACCTTTTGCTACGACACGAAACGGAATTGGTCGGTTTCAGTGTCATGGGGACACAGCGTGCAGTTGTATCTGTCGTTGGTCACGGCAATGGAGCTGGAGAGGGCGGTTGGAACGTTCCAGACATGGCAGAGCTTGAGTGATGGGCCTTTTGTGTTCAACACCCGACCCGTAAGCAGCGACCCGTGTGGGAGGCCCGTTTTGTTTTTCTTGGATCGGGTCGAGAACGTGGGTGCGGGGAATACACGGTCCACGTATGTGAGGCACGTTGACGCATTGGGGAAAGAGTGCGGAAGAGTTGACTTGATTGGGGTCCTCGATGTTGTTCAGTTGGTCAATGTCTCTGCCCCTTCCCTTACCCCAGACTTGTGGAAAAAGGCACCGCGTAGACAATGCTGTGAGATAATCAACGGCACAGAAGGGGTCAACAATGTGGTTCAGATCAAGATCAGAGGCTGCCATCGCTTTGAGAGTGTGACTCCTCCTCCCTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02146	42666	47244	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002146s00039028.1	PF04646.7	DUF604	274	425	2.70E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.466
SRR1783600	control	0.364
SRR1783602	moderate drought stress	0.109
SRR1811619	moderate drought stress	0.195

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.158
DRR006520	Root Summer glycyrrhizin high producing strain	0.209
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.027
DRR006524	Root Summer glycyrrhizin low producing strain	0.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.385
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.833

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.128
SRR2868004	Drought Stress(Tissue:root)	0.280
SRR2967015	Control (Tissue:root)	0.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	18.026
SRR9715740	Leave	12.243
SRR9715741	Leave	20.121
SRR9715739	Root	1.262
SRR9715742	Root	1.626
SRR9715743	Root	0.753

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.285
SRR8749028	MeJA induced 9h	0.100
SRR8749029	MeJA induced 9h	0.022
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.383
SRR8400027	Control-Root	0.613