Gene detail information of Glyur002157s00034198.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G24500.13.00E-59multiprotein bridging factor 1C
NRAAL32037.23.82E-87ethylene-responsive transciptional coactivator-like protein [Retama raetam]
COGYP_003986419.13.00E-06hypothetical protein HMPREF0421_21314 [Gardnerella vaginalis ATCC 14019]
Swissprottr|Q9LV58|MBF1C_ARATH8.00E-75Multiprotein-bridging factor 1c
trEMBLtr|Q8S4Q2|Q8S4Q2_9FABA1.00E-87Ethylene-responsive transciptional coactivator-like protein {ECO:0000313|EMBL:AAL32037.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold021573630636746+


Gene family

Gene familysubfamily
Transcription Factors FamilyMBF1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0043565  sequence-specific DNA binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002157s00034198.1PF08523.5MBF111818.10E-26
Glyur002157s00034198.1PF01381.17HTH_3891401.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.132
SRR1783600control8.076
SRR1783602moderate drought stress5.630
SRR1811619moderate drought stress8.052

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain57.507
DRR006520Root Summer glycyrrhizin high producing strain57.613
DRR006521Root Winter glycyrrhizin high producing strain11.721
DRR006522Root Winter glycyrrhizin high producing strain11.466
DRR006523Root Summer glycyrrhizin low producing strain7.247
DRR006524Root Summer glycyrrhizin low producing strain6.805
DRR006525Leaf Summer glycyrrhizin high producing strain0.487
DRR006526Leaf Summer glycyrrhizin high producing strain0.631

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.512
SRR2868004Drought Stress(Tissue:root)25.534
SRR2967015Control (Tissue:root)15.246

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.006
SRR9715740Leave15.485
SRR9715741Leave10.021
SRR9715739Root13.320
SRR9715742Root33.236
SRR9715743Root31.571

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h135.900
SRR8749028MeJA induced 9h105.667
SRR8749029MeJA induced 9h99.555
SRR8749030Uninduced44.882
SRR8749031Uninduced12.984
SRR8749032Uninduced82.712

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.801
SRR8400027Control-Root39.088

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved