Gene detail information of Glyur002158s00036122.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49610.1 | 8.00E-15 | F-box family protein |
| NR | KEH32727.1 | 4.30E-175 | F-box protein interaction domain protein [Medicago truncatula] |
| Swissprot | tr|Q9FGY4|FB341_ARATH | 6.00E-17 | F-box protein At5g49610 |
| trEMBL | tr|A0A072UST7|A0A072UST7_MEDTR | 2.00E-175 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH32727.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02158 | 25807 | 27949 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.685 |
| SRR1783600 | control | 15.514 |
| SRR1783602 | moderate drought stress | 8.381 |
| SRR1811619 | moderate drought stress | 8.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.885 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.736 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.195 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.853 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.979 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.038 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.719 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.744 |
| SRR2967015 | Control (Tissue:root) | 6.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.096 |
| SRR9715740 | Leave | 8.666 |
| SRR9715741 | Leave | 7.214 |
| SRR9715739 | Root | 1.465 |
| SRR9715742 | Root | 3.031 |
| SRR9715743 | Root | 1.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.438 |
| SRR8749028 | MeJA induced 9h | 1.272 |
| SRR8749029 | MeJA induced 9h | 2.476 |
| SRR8749030 | Uninduced | 0.698 |
| SRR8749031 | Uninduced | 0.536 |
| SRR8749032 | Uninduced | 1.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.165 |
| SRR8400027 | Control-Root | 12.586 |