Gene detail information of Glyur002166s00038149.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12010.1 | 5.00E-28 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_003549632.1 | 1.31E-46 | PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase-like [Glycine max] |
| Swissprot | tr|P31237|ACCO_ACTDE | 4.00E-42 | 1-aminocyclopropane-1-carboxylate oxidase |
| trEMBL | tr|I1MR21|I1MR21_SOYBN | 5.00E-47 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02166 | 3115 | 3372 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05933 | E1.14.17.4 | EC:1.14.17.4 | Cysteine and methionine metabolism | map00270 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.850 |
| SRR1783600 | control | 28.167 |
| SRR1783602 | moderate drought stress | 41.663 |
| SRR1811619 | moderate drought stress | 37.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.148 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.942 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.054 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.751 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.853 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.409 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.478 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.023 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.094 |
| SRR2967015 | Control (Tissue:root) | 21.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.703 |
| SRR9715739 | Root | 1.112 |
| SRR9715742 | Root | 15.526 |
| SRR9715743 | Root | 14.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.178 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 41.162 |
| SRR8400027 | Control-Root | 19.525 |