Gene detail

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Gene detail information of Glyur002167s00037611.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	1.00E-151	S-locus lectin protein kinase family protein
NR	KDO74352.1	0	hypothetical protein CISIN_1g038934mg, partial [Citrus sinensis]
COG	YP_284821.1	2.00E-19	protein kinase:GAF [Dechloromonas aromatica RCB]
Swissprot	tr\|O81832\|Y4729_ARATH	2.00E-179	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|I1LSR9\|I1LSR9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G17450.1}

Sequence

Transcript Sequence

>Glyur002167s00037611.1
ATGTCCTCCACATTGGACATGATTACTCCAAACCAACCCATCAAAGATGGCAAGAACGAAAACGAGACTCTGGTTTCAACAAATGGAACCTTTGAAGCAGGTTTCTTCAACCCTCCTGAGAATTCAAAAAGCCGCTACTTTGGAATTTGTGAAGGAAACCTTAAAATAATGGATGGTACCAAAGGAGTCAAAATCTGGTCCTCAAATGCATCAAAGACAACAGAGAAGAAACCAGTTATTGTGGTGGTGCAGTTGTTGGAATCAGGAAACATGGTTGTGAAAAATGGACATAACAACAACTTAGAGGGAATGTTGTTATGGCAGAGCTTTGATTACCCAGGTGACACTTTTCTTCCAGGGATGAAAATTGGAAGAAACTTAAGAACAGGTCAAAATTGGTCACTGAGGTCATGGAAAACACTGGATGATCCTACCCCAGGTGAGTTTTCATTCCACGTTGATATTCAAGGGCTTCCTCAATTGGTTATTACACGGGAGGGTACTAGAATTTACAGACCCGGATCATGGAATGGTCTTAGTGTTACGGGAATCCCTGAAGAAGTAACTGACCAAATTGTTAAGTCCCTTTTTGTGATGAATAGTGAGGAAGTGTTTTATGAGATTGAACTGATAAGTAGTTCAGTTATCATGAGAAGCAGACTAACCCCAAAAGGGTATCAATGTGAAAGGTATGCCATGTGTGGTGTGAATACTAATTGCGATGGCAAAGGGTCTGAAAACTGTGAATGCTTAACAGGATTCAAAGCCAATTCTGCATATTCAGCAGGTAAGCTTAGCGGGTGTGTTAGAACCACACCAGAAGAGTGTAATAGTGGAGATATTAGTGATGATGATTTTCATAAGTATGAGGGAATGAAATTGCCAGACACTTCTTCGTCGTGGTATGATAAGACCATTGGTCTTGTGGAGTCATATGCTAAATTGAATATTAGTGGCAATGGAAGTGGTTGCTTGCATTGGTTTTCTGACATTGTTGACTTGAGGAAACTCCCTGAGGGAGGACAGGATTTCTATTTAAGAGTGACTGCAGCTTCAAATCTAGCCAGGAAGAACAAGAGTGAACAGGATGATATTGATTTACCATTTTTTGAATTTCTAACCATATCTAATGCGACAAATCACTTTTCACAAAGTAACAAATTGGGACAAGGTGGCTTTGGACCTGTGTACAAGGAATTCAAGAATGAAGTAATGTTGATTGCAAAACTTCAACACCGCAATCTCGTAAAGCTTCTTGGTTGTTCCATTCAGCAAGAGGAGAAGTTGTTGATTTATGAATTCATGCCTAATAGAAATTCAGTAGGACGTAAATCATTGGGTTGGGCTAAGCGATTCGAAATTATTGGTGGAATTGCTCGAGGACTTCTCTACCTTCATCAAGACTCTAGGCTAAAGATCATTCACAGGGATCTAAAAACCAGTAATGTTCTTCTTGATGATAACATGAATCCAAAAATATCGGATTTCGGTATGGCTAGAACATTTGGCCTAGATCAAGATGAAGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTGTTCATGGATCTTTTTCAGTCAAATCTGATGTGTTCAGCTTTGGTGTGATTGCATGGAGACTATGGACTGAGGAAAGGCCAATGGAACTTATTGATGACATGATGGATGATTCAAGCAATCCATCTGAAATATTAAGATATATTCATATTGGTTTATTATGCGTGCAACAAAGACCAGAGGATAGGCCAAACATGTCATCAGTGGTTTTAATGTTGAATGGTGAAAAGTTATTACCTGAGCCAAGTGAACCTGGGTTCTACACAGGAAGAGATCTTCCAACCCAGACAGATTCTTCAAGAAATTGTGATGTGTATTCGCTCAATGAAATTTCTGACTCATTAAGGGGAGACGAGGGGAAAGCCGAACTGGGGATTGATCAGGAGAGAAGAGATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02167	34415	40413	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002167s00037611.1	PF01453.19	B_lectin	50	144	1.00E-21
Glyur002167s00037611.1	PF00954.15	S_locus_glycop	227	257	3.90E-05
Glyur002167s00037611.1	PF00069.20	Pkinase	401	556	3.40E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.163
SRR1783600	control	0.157
SRR1783602	moderate drought stress	0.064
SRR1811619	moderate drought stress	0.106

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.055
DRR006520	Root Summer glycyrrhizin high producing strain	0.041
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.361
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.744

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.380
SRR2868004	Drought Stress(Tissue:root)	0.326
SRR2967015	Control (Tissue:root)	0.284

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.715
SRR9715740	Leave	1.826
SRR9715741	Leave	2.923
SRR9715739	Root	0.020
SRR9715742	Root	0.164
SRR9715743	Root	0.080

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.543
SRR8400027	Control-Root	1.204