Gene detail

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Gene detail information of Glyur002171s00034486.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27330.1	1.00E-59	zinc finger (C3HC4-type RING finger) family protein
NR	KEH22271.1	8.39E-168	C3HC4-type RING zinc finger protein [Medicago truncatula]
Swissprot	tr\|Q8GW10\|BAH1L_ARATH	6.00E-06	Probable E3 ubiquitin-protein ligase BAH1-like
trEMBL	tr\|A0A072TYL1\|A0A072TYL1_MEDTR	3.00E-168	C3HC4-type RING zinc finger protein {ECO:0000313\|EMBL:KEH22271.1}

Sequence

Transcript Sequence

>Glyur002171s00034486.1
CCTTAACCCTTTGTTGCCTCTCTTCTCCACATGCTGCAGAAAACAAAACCCATTCAAAACCAAGAAGAACAAAAACTAGTAGTGGTGATTGGTGAGTGAAGAACAACAACAAAAAATGGTGGTGAGTGAAGAACAAAAACGAAGCAGCCCCATAAACCAAAAGAAAACAGTGATGATGGAGTCATCAAATAGCACCCAAAACGTGGCTGCTAGTANCCTTATAAGCCCAAGGTTCAAATCTGCGGCTGCTATGGCAGGTTGGGATGAAGAAGCGCTTTTACTTGCAAGCCTCATTGTTGAAGACACGCCAGATAGAGATTCCAAACACAAGAAGCGCTTTGTTTTGAACTCCAAAACCCCACCCACCAATTCAACGAGGAAACGCAGAGCTCAGAGGAGTCCNCATCCAATGCCGGTGGTTGTTCTTGATCTTGATGAAGAAGAAACTCCAACAAAGGACAGTGGGAAAAAGAAGAAAGAGAAGAAAAGTTGTGTAAGGGAAGGAAATAAAGTGGGAGAAAATCAATTGACCCAGCAGAAGAGTTCTGGTGTCTCTTCTACTACTACTTCTAGTAGTTCTGCTCTTCCATGCATTGATAAACTCAGGGAAGAGCTTTCCTGCGCAATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAAAAAATGTCTGCGATCTGCTGCAGACAAGTGTGGCAAGAAATGCCCCAAATGCAGGCAATTGATAAGCAATGGACGATCCTGCACAGTGAATACAGTTCTGTGGAACACAATACAGCTCCTGTTCCCTCAGGAAGTTGAAGCAAGGAAAGTAGCTGCTGGTGCCTTAAACAATAATCGACAAGCTCAGTGTCTAAGTCCAGAAACAGCATTTTATAGTAACCTAAGGAATAGAAGCACACAACAACAACAATATGGGGCATCTAGTAGGGGCATGAGTACTTCAAGGAGAAATGAGGCTGAGAATGATGCTGCATTGGCTAGAAGGTTATTACAGAGAGAAATTGATGGACAAGGCCAAAGCCAACATGGAACTACAACAAGAAGAACAACAAGGGGTAGCAGTTATTCAAGGAATCAAGAAGCTGCTACATCTGGTGTAAGAGTGAGGACAAGAAGAGGGGTTTCAAGCCAAGATGAGGATGCTGCTTTGGCTCTAAGGTTACAGAGAGAGGAGTTTATGCAAGCTTTTAGGAGTGGCCAGGACCAGTCAAGCATATCCTCTTCTTCCTTAGCTAGAGCAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCTTCGTACTCTTAGAGATCGAAGAATATAATATAATAACAACCAACACAAAGGGGGAAAATGTGAGATATCAATTGCATAAGTTCTACAATTCTATTCTGTATAATTGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02171	27600	29634	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002171s00034486.1	PF00097.20	zf-C3HC4	169	207	4.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.917
SRR1783600	control	1.910
SRR1783602	moderate drought stress	1.018
SRR1811619	moderate drought stress	1.030

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.494
DRR006520	Root Summer glycyrrhizin high producing strain	4.074
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.693
DRR006524	Root Summer glycyrrhizin low producing strain	0.695
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.912
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.917

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.410
SRR2868004	Drought Stress(Tissue:root)	7.879
SRR2967015	Control (Tissue:root)	8.759

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.236
SRR9715740	Leave	0.106
SRR9715741	Leave	0.649
SRR9715739	Root	0.010
SRR9715742	Root	0.804
SRR9715743	Root	0.304

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.277
SRR8749028	MeJA induced 9h	13.112
SRR8749029	MeJA induced 9h	13.221
SRR8749030	Uninduced	4.183
SRR8749031	Uninduced	8.319
SRR8749032	Uninduced	4.604

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.567
SRR8400027	Control-Root	3.717