Gene detail information of Glyur002171s00034490.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 8.00E-22 | F-box and associated interaction domains-containing protein |
| NR | XP_003547680.1 | 0 | PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 1.00E-23 | F-box protein CPR30 |
| trEMBL | tr|I1MLP4|I1MLP4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G06890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02171 | 45577 | 46791 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002171s00034490.1 | PF00646.28 | F-box | 5 | 44 | 5.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.641 |
| SRR1783600 | control | 0.606 |
| SRR1783602 | moderate drought stress | 0.329 |
| SRR1811619 | moderate drought stress | 0.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.358 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.862 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.560 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.611 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.305 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.721 |
| SRR2967015 | Control (Tissue:root) | 64.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.103 |
| SRR9715740 | Leave | 1.202 |
| SRR9715741 | Leave | 3.802 |
| SRR9715739 | Root | 28.684 |
| SRR9715742 | Root | 26.943 |
| SRR9715743 | Root | 29.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 452.107 |
| SRR8749028 | MeJA induced 9h | 460.603 |
| SRR8749029 | MeJA induced 9h | 313.994 |
| SRR8749030 | Uninduced | 1244.909 |
| SRR8749031 | Uninduced | 922.840 |
| SRR8749032 | Uninduced | 737.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.221 |
| SRR8400027 | Control-Root | 24.617 |