Gene detail information of Glyur002179s00038955.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G01820.12.00E-113Leucine-rich repeat protein kinase family protein
NRXP_002532551.10Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
COGYP_001958461.14.00E-23hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|P43298|TMK1_ARATH1.00E-127Probable receptor protein kinase TMK1 (Precursor)
trEMBLtr|B9T2T2|B9T2T2_RICCO0Serine/threonine-protein kinase PBS1, putative {ECO:0000313|EMBL:EEF29845.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold021794221946549+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.6.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002179s00038955.1PF13878.1zf-C2H2_3801207.70E-17
Glyur002179s00038955.1PF13880.1Acetyltransf_132643311.00E-27
Glyur002179s00038955.1PF00069.20Pkinase3736432.00E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.269
SRR1783600control1.211
SRR1783602moderate drought stress1.257
SRR1811619moderate drought stress1.206

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.062
DRR006520Root Summer glycyrrhizin high producing strain1.092
DRR006521Root Winter glycyrrhizin high producing strain0.050
DRR006522Root Winter glycyrrhizin high producing strain0.036
DRR006523Root Summer glycyrrhizin low producing strain1.129
DRR006524Root Summer glycyrrhizin low producing strain0.982
DRR006525Leaf Summer glycyrrhizin high producing strain1.524
DRR006526Leaf Summer glycyrrhizin high producing strain1.538

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.664
SRR2868004Drought Stress(Tissue:root)2.956
SRR2967015Control (Tissue:root)3.578

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.920
SRR9715740Leave0.928
SRR9715741Leave0.915
SRR9715739Root0.558
SRR9715742Root0.625
SRR9715743Root0.696

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.254
SRR8749028MeJA induced 9h2.807
SRR8749029MeJA induced 9h1.418
SRR8749030Uninduced0.533
SRR8749031Uninduced0.134
SRR8749032Uninduced0.235

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.144
SRR8400027Control-Root3.226

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved