Gene detail information of Glyur002188s00037689.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10160.1 | 7.00E-84 | Thioesterase superfamily protein |
| NR | KEH31236.1 | 4.76E-135 | beta-hydroxyacyl-ACP dehydratase [Medicago truncatula] |
| COG | YP_007141585.1 | 6.00E-49 | 3-hydroxyacyl-(acyl-carrier-protein) dehydratase [Crinalium epipsammum PCC 9333] |
| trEMBL | tr|A0A072UPD2|A0A072UPD2_MEDTR | 2.00E-135 | Beta-hydroxyacyl-ACP dehydratase {ECO:0000313|EMBL:KEH31236.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02188 | 11816 | 15444 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K02372 | fabZ | EC:4.2.1.59 | Fatty acid metabolism | map01212 |
| Fatty acid biosynthesis | map00061 | |||
| Biotin metabolism | map00780 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002188s00037689.1 | PF07977.8 | FabA | 91 | 216 | 3.40E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.575 |
| SRR1783600 | control | 30.797 |
| SRR1783602 | moderate drought stress | 13.795 |
| SRR1811619 | moderate drought stress | 13.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.017 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.656 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.941 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.663 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.144 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.033 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 61.836 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 61.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.501 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.015 |
| SRR2967015 | Control (Tissue:root) | 15.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 59.687 |
| SRR9715740 | Leave | 47.971 |
| SRR9715741 | Leave | 41.774 |
| SRR9715739 | Root | 10.642 |
| SRR9715742 | Root | 13.297 |
| SRR9715743 | Root | 10.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.523 |
| SRR8749028 | MeJA induced 9h | 10.730 |
| SRR8749029 | MeJA induced 9h | 13.781 |
| SRR8749030 | Uninduced | 4.783 |
| SRR8749031 | Uninduced | 0.860 |
| SRR8749032 | Uninduced | 3.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.572 |
| SRR8400027 | Control-Root | 31.916 |