Gene detail information of Glyur002188s00037694.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22040.1 | 6.00E-150 | Galactose oxidase/kelch repeat superfamily protein |
| NR | KHN06826.1 | 0 | F-box/kelch-repeat protein [Glycine soja] |
| COG | YP_003324485.1 | 2.00E-21 | Kelch repeat-containing protein [Thermobaculum terrenum ATCC BAA-798] |
| Swissprot | tr|Q9LM55|FBK8_ARATH | 0 | F-box/kelch-repeat protein At1g22040 |
| trEMBL | tr|V7CLI2|V7CLI2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW31077.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02188 | 40398 | 41834 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002188s00037694.1 | PF00646.28 | F-box | 43 | 84 | 4.00E-07 |
| Glyur002188s00037694.1 | PF01344.20 | Kelch_1 | 173 | 218 | 2.20E-13 |
| Glyur002188s00037694.1 | PF01344.20 | Kelch_1 | 221 | 269 | 6.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.603 |
| SRR1783600 | control | 2.662 |
| SRR1783602 | moderate drought stress | 2.643 |
| SRR1811619 | moderate drought stress | 2.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.511 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.642 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.515 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.525 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.626 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.428 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.833 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.294 |
| SRR2967015 | Control (Tissue:root) | 28.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.260 |
| SRR9715740 | Leave | 35.539 |
| SRR9715741 | Leave | 30.411 |
| SRR9715739 | Root | 30.976 |
| SRR9715742 | Root | 29.858 |
| SRR9715743 | Root | 31.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.193 |
| SRR8749028 | MeJA induced 9h | 41.869 |
| SRR8749029 | MeJA induced 9h | 40.438 |
| SRR8749030 | Uninduced | 35.546 |
| SRR8749031 | Uninduced | 11.781 |
| SRR8749032 | Uninduced | 17.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.325 |
| SRR8400027 | Control-Root | 17.420 |