Gene detail information of Glyur002189s00039217.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25780.1 | 1.00E-63 | allene oxide cyclase 3 |
| NR | AEE99197.1 | 1.59E-151 | allene oxide cyclase 2 [Glycine max] |
| Swissprot | tr|Q93ZC5|AOC4_ARATH | 2.00E-90 | Allene oxide cyclase 4, chloroplastic (Precursor) |
| trEMBL | tr|F6KBT2|F6KBT2_SOYBN | 6.00E-152 | Allene oxide cyclase 2 {ECO:0000313|EMBL:AEE99197.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02189 | 8870 | 33343 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10525 | AOC | EC:5.3.99.6 | alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002189s00039217.1 | PF06351.6 | Allene_ox_cyc | 79 | 254 | 1.30E-102 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 150.185 |
| SRR1783600 | control | 150.875 |
| SRR1783602 | moderate drought stress | 101.599 |
| SRR1811619 | moderate drought stress | 100.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 147.783 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 144.272 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 53.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 50.413 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 73.282 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 71.781 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 63.275 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 61.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 90.187 |
| SRR2868004 | Drought Stress(Tissue:root) | 70.561 |
| SRR2967015 | Control (Tissue:root) | 75.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 52.692 |
| SRR9715740 | Leave | 44.077 |
| SRR9715741 | Leave | 49.177 |
| SRR9715739 | Root | 26.358 |
| SRR9715742 | Root | 58.216 |
| SRR9715743 | Root | 49.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.170 |
| SRR8749028 | MeJA induced 9h | 16.108 |
| SRR8749029 | MeJA induced 9h | 19.612 |
| SRR8749030 | Uninduced | 15.616 |
| SRR8749031 | Uninduced | 13.307 |
| SRR8749032 | Uninduced | 10.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 115.937 |
| SRR8400027 | Control-Root | 96.554 |