Gene detail information of Glyur002196s00042511.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29200.1 | 6.00E-99 | chorismate mutase 1 |
| NR | XP_004490130.1 | 8.43E-163 | PREDICTED: chorismate mutase, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|P42738|CM1_ARATH | 3.00E-140 | Chorismate mutase 1, chloroplastic (Precursor) |
| trEMBL | tr|A0A072UEK4|A0A072UEK4_MEDTR | 5.00E-162 | Chorismate mutase {ECO:0000313|EMBL:KEH27841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02196 | 31690 | 36210 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01850 | E5.4.99.5 | EC:5.4.99.5 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002196s00042511.1 | PF01817.16 | CM_2 | 83 | 150 | 1.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.032 |
| SRR1811619 | moderate drought stress | 0.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.202 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.995 |
| SRR2967015 | Control (Tissue:root) | 1.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.041 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.370 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.135 |
| SRR8400027 | Control-Root | 0.311 |