Gene detail information of Glyur002203s00035380.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40470.1 | 3.00E-43 | LOB domain-containing protein 15 |
| NR | KHN48386.1 | 2.21E-78 | LOB domain-containing protein 15 [Glycine soja] |
| Swissprot | tr|Q8L5T5|LBD15_ARATH | 2.00E-53 | LOB domain-containing protein 15 |
| trEMBL | tr|I1KBA6|I1KBA6_SOYBN | 4.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G15050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02203 | 16871 | 17994 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002203s00035380.1 | PF03195.9 | DUF260 | 40 | 87 | 1.10E-16 |
| Glyur002203s00035380.1 | PF03195.9 | DUF260 | 87 | 123 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.525 |
| SRR1783600 | control | 0.439 |
| SRR1783602 | moderate drought stress | 0.294 |
| SRR1811619 | moderate drought stress | 0.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.546 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.541 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.281 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.366 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.931 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.743 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.941 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.840 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.241 |
| SRR2967015 | Control (Tissue:root) | 3.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.277 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.275 |
| SRR9715742 | Root | 0.590 |
| SRR9715743 | Root | 0.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.183 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.561 |
| SRR8400027 | Control-Root | 0.569 |